Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,763,466 – 7,763,565 |
Length | 99 |
Max. P | 0.826074 |
Location | 7,763,466 – 7,763,565 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 80.53 |
Mean single sequence MFE | -29.78 |
Consensus MFE | -17.41 |
Energy contribution | -17.82 |
Covariance contribution | 0.42 |
Combinations/Pair | 1.19 |
Mean z-score | -2.30 |
Structure conservation index | 0.58 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.826074 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7763466 99 - 22407834 CUCCCAUUUAACGCCCUGCAGCUUCAAACGCUCCGCGUUCUUCUCGCGAGCGGUCUUCAGCUGUUUGGCAA-AAAAAAAGUGGUUUAAACUAAAC----UAAAG ............(((..((((((.....(((((.(((.......))))))))......))))))..)))..-........(((((((...)))))----))... ( -30.00) >DroSec_CAF1 10957 100 - 1 UUCCCAUUUCACGCCCUGCAGCUUCAAACGCUCCGCGUUCUUCUCGCGAGCGGUCUUCAGCUGUUUGGCAUUAAAAAAAGGGGUUAAAACGAAAC----UGAUG .((((.(((...(((..((((((.....(((((.(((.......))))))))......))))))..)))......))).))))............----..... ( -29.80) >DroSim_CAF1 11282 100 - 1 UUCCCAUUUCACGCCCUGCAGCUUCAAACGCUCCGCGUUCUUCUCGCGAGCGGUCUUCAGCUGUUUGGCAUUAAAAAAAGGGGUUAAAACGAAAC----UGAUG .((((.(((...(((..((((((.....(((((.(((.......))))))))......))))))..)))......))).))))............----..... ( -29.80) >DroEre_CAF1 11339 96 - 1 CUCCCAUUUCACGCCCUGGAGCUUCAAGCGCUCCGCAUUCUUCUCCCGAGCGGUCUUCAGCUGUUUGGUG----CAAAAGGGGUUAAAACUGAAA----UGAAA ....(((((((.((((((((((.......)))))(((........(((((((((.....)))))))))))----)....)))))......)))))----))... ( -32.30) >DroYak_CAF1 11484 96 - 1 CUCCCAUUUCACGCCCUGCAGCUUCAAACGCUCCGCAUUCUUUUCCCGAGCGGUCUUUAGCUAUUGGUUA----GAAAAGGGGUUAAAACUUAAG----UAAAG .((((.((((..(((....((((.....(((((.(.(......).).)))))......))))...)))..----)))).))))............----..... ( -21.30) >DroAna_CAF1 12757 99 - 1 CUCCCAUUUCACGCCCUGCAGCUUCAGCCGUUCGGCAUUCUUUUCACGAGCGGUUUUUAGCUGUAAGGG-----AAGAAUGGAUUAAGUCUUUAGGAUAUGCAU ...((((((....((((((((((..(((((((((............)))))))))...)))))).))))-----..)))))).....(((.....)))...... ( -35.50) >consensus CUCCCAUUUCACGCCCUGCAGCUUCAAACGCUCCGCAUUCUUCUCGCGAGCGGUCUUCAGCUGUUUGGCA____AAAAAGGGGUUAAAACUAAAC____UGAAG .((((.(((...(((..((((((.....(((((..............)))))......))))))..)))......))).))))..................... (-17.41 = -17.82 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:25 2006