Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,754,812 – 7,754,903 |
Length | 91 |
Max. P | 0.505942 |
Location | 7,754,812 – 7,754,903 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 78.95 |
Mean single sequence MFE | -30.32 |
Consensus MFE | -17.76 |
Energy contribution | -17.27 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.26 |
Mean z-score | -1.53 |
Structure conservation index | 0.59 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.505942 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7754812 91 + 22407834 AAAUUAGCUGCUUUUCUCCUGUGCACUCGAGUUGGCCAAUUGGUUGGUUCGGUGACUCUGACACCGAUUGGCUCCAAUGCAGC-----GCGCUGCC ......(((((....(((..(....)..)))..(((((((((((....((((.....)))).))))))))))).....)))))-----........ ( -28.40) >DroSec_CAF1 2321 91 + 1 AAAUUUGGUUCUUUUCUCCUGUGCACUCGAGUUGGCCAAUUGUUGGGUUCAGUGGCUCUGACACUGAUUGGCGCCAAUGCAGU-----GCGCUGCC ....................(((((((...((((((.....((..(..((((((.......)))))))..))))))))..)))-----)))).... ( -28.40) >DroSim_CAF1 2373 91 + 1 AAAUUUGGAGCUUUUCUCCUGUGCACUCGAGUUGGCCAAUUGUUGGGUUCAGUGGCUCUGACACUGAUUGGCGCCAAUGCAGC-----GCGCUGCC ......((((.....)))).((((.((...((((((.....((..(..((((((.......)))))))..))))))))..)).-----)))).... ( -28.40) >DroEre_CAF1 2516 90 + 1 AAAGUUGGCCCUUUUUUGCGGUGCACUCAACUUGGCCGAUUGUU-GGUUCGGUGACUCUGACACCGAUUGGCGCCAAUGCAGU-----GCGCUGCC .................((((((((((((..(((((.....((.-.((.(((((.......)))))))..))))))))).)))-----))))))). ( -34.60) >DroYak_CAF1 2567 90 + 1 AAAGUUGGUAAUUUUCUCCAGUGCACUGAAGUUGGCCGAUUGUU-GGUUCGGUGACUCUGACACCGAUUGGCGCCAAUGCAGU-----GCGCUGCC ..................((((((((((..((((((.....((.-.((.(((((.......)))))))..)))))))).))))-----)))))).. ( -35.90) >DroAna_CAF1 2464 81 + 1 AAAU--GCUAUUUUU-UUCUCAGUACU-----------UUUGGU-GGUUCAGUGGCUCUGAUACCGAAUGGCGCCGGUGCAGCCGCUGGUGCUGCC ....--.........-....(((((((-----------...(((-((((((.((((.((..........)).)))).)).)))))))))))))).. ( -26.20) >consensus AAAUUUGGUACUUUUCUCCUGUGCACUCGAGUUGGCCAAUUGUU_GGUUCAGUGACUCUGACACCGAUUGGCGCCAAUGCAGC_____GCGCUGCC ..................................(((((((....(((((((.....)))).))))))))))......(((((.......))))). (-17.76 = -17.27 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:24 2006