Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,751,012 – 7,751,105 |
Length | 93 |
Max. P | 0.539345 |
Location | 7,751,012 – 7,751,105 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 82.22 |
Mean single sequence MFE | -33.18 |
Consensus MFE | -18.30 |
Energy contribution | -18.05 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.06 |
Mean z-score | -2.30 |
Structure conservation index | 0.55 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.539345 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7751012 93 + 22407834 UAUGGCCAAUUGCCAUGGGGCUUGGCUGCCGACACGACACUA-AACAAC-GCGGCAAAAUGUUUCGCUGCCGUUUGUUUAGCUGCCACUUGG---CUC ...((((((..(((....)))))))))(((((...(.(((((-(((((.-((((((...........)))))))))))))).)))...))))---).. ( -34.20) >DroPse_CAF1 9627 82 + 1 UAUGGCCAAUUGCUAUGGGGCUUGGCUGCCGACACGACACCG-AACAACAGCGGCAAAAA----UGCUGCUGUUUGCU--------GUUUGU---CUC ...((((((..(((....)))))))))...((((.((((.((-(...(((((((((....----)))))))))))).)--------))))))---).. ( -30.90) >DroSec_CAF1 16264 93 + 1 UAUGGCCAAUUGCCAUGGGGCUUGGCUGCAGACACGACACUA-AACAAC-GCGGCAAAAUGUUUCGCUGCCGUUUGUUUAGCUGCCACUUGG---CCC ((((((.....))))))(((((.((..((((........(((-(((((.-((((((...........))))))))))))))))))..)).))---))) ( -35.40) >DroSim_CAF1 6745 95 + 1 UAUGGCCAAUUGCCAUGGGGCUUGGCUGCCGACACGACACUA-AACAAC-GCGGCAAAAUGUUUCGCUGCCGUUUGUUUAGCUGCCACUUGGAG-CCC ((((((.....))))))(((((((((((.((...)).))(((-(((((.-((((((...........))))))))))))))..)))).....))-))) ( -33.10) >DroAna_CAF1 15195 97 + 1 UAUGGCCAAUUGCUUUGGGGCUUGGCUGCCGACACGACACCGGUACAACGGCGGCAAAAUGUUUAGCUGCUGUUUGUUUAGCUGCCACUUGCUGGCC- ...(((((...((..(((((((..(((((((.........))))).(((((((((..........))))))))).))..)))).)))...)))))))- ( -34.60) >DroPer_CAF1 9583 82 + 1 UAUGGCCAAUUGCUAUGGGGCUUGGCUGCCGACACGACACCG-AACAACAGCGGCAAAAA----UGCUGCUGUUUGCU--------GUUUGU---CUC ...((((((..(((....)))))))))...((((.((((.((-(...(((((((((....----)))))))))))).)--------))))))---).. ( -30.90) >consensus UAUGGCCAAUUGCCAUGGGGCUUGGCUGCCGACACGACACCA_AACAAC_GCGGCAAAAUGUUUCGCUGCCGUUUGUUUAGCUGCCACUUGG___CCC ...((((((..(((....)))))))))...................(((.(((((..........))))).)))........................ (-18.30 = -18.05 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:23 2006