| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,747,748 – 7,747,844 |
| Length | 96 |
| Max. P | 0.749784 |
| Location | 7,747,748 – 7,747,844 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 75.97 |
| Mean single sequence MFE | -22.58 |
| Consensus MFE | -7.53 |
| Energy contribution | -8.06 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.47 |
| Structure conservation index | 0.33 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.749784 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7747748 96 - 22407834 GCACCUGGCCACAGAAAAAGGGCUUAAAUGCACUGGGCCAUUUGCAUACAAC-ACAAAAACAU-AAGGAGAAUAUUAA--AUCUGC----UA-UGUCUAAACCUU (((..(((((.(((.......((......)).))))))))..))).......-......((((-(.(.(((.......--.))).)----))-)))......... ( -21.70) >DroSec_CAF1 13026 96 - 1 GCACCUGGCCACAGAAAAAUGGUAUAAAUGCACUGGGCCAUUUGCAUACAAC-ACGAAAACAU-AAGGAGAAUAGCAU--AUCUGC----UA-UGUCUAAACCUU (((..(((((.(((....((.......))...))))))))..))).......-..........-(((((((((((((.--...)))----))-).)))...)))) ( -23.70) >DroSim_CAF1 3533 97 - 1 GCACCUGGCCACAGAAAAACGGUAUAAAUGCACUGGGCCAUUUGCAUACAAC-ACAAAAACAAAAAGGGGAAUAGCAU--AUCUGC----UA-UUUCUAAACCUU (((..(((((.(((.......(((....))).))))))))..))).......-..............((((((((((.--...)))----))-)))))....... ( -25.90) >DroEre_CAF1 11394 101 - 1 GCAGCUGGCCGCAGGAAA-AGAUAUAAAUGCAACGGGCCAUUUGCAUACAAC-ACAACAACAU-GGGGAGAGUAUAAUUCAUAUGUAUGCUC-AGUCUAAACCUU ((((.((((((((.....-.........)))....))))).)))).......-.........(-(((..(((((((.........)))))))-..))))...... ( -22.54) >DroYak_CAF1 11937 97 - 1 GCACCUGGCCACAGAAAA-UGAUAUAAAUGCCACGGGCCAUUUGCAUACAAC-ACAAAAACAU-AGGGAGAAUACUAUGGAUAUGU----UU-UGUCUAAACCUU (((..(((((.......(-(.......))......)))))..)))..((((.-(((.(..(((-((........)))))..).)))----.)-)))......... ( -21.12) >DroAna_CAF1 12050 92 - 1 CCACCUGGUCACAGAAAA--UAUAUGUAUGCAA----AUAUUUGCAUACAAAAACGCAAAAAU-AAGGAAAACAGAGU--CGCGAC----CAGUCUUUAGACCUU ....((((((........--....(((((((((----....))))))))).....((......-..............--.)))))----)))............ ( -20.50) >consensus GCACCUGGCCACAGAAAA_UGAUAUAAAUGCAAUGGGCCAUUUGCAUACAAC_ACAAAAACAU_AAGGAGAAUAGAAU__AUCUGC____UA_UGUCUAAACCUU (((..(((((.........................)))))..)))............................................................ ( -7.53 = -8.06 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:22 2006