Locus 2752

Sequence ID 2L_DroMel_CAF1
Location 7,740,568 – 7,740,684
Length 116
Max. P 0.966360
window4374

overview

Window 4

Location 7,740,568 – 7,740,684
Length 116
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 79.89
Mean single sequence MFE -27.25
Consensus MFE -17.34
Energy contribution -18.52
Covariance contribution 1.19
Combinations/Pair 1.19
Mean z-score -2.41
Structure conservation index 0.64
SVM decision value 1.59
SVM RNA-class probability 0.966360
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7740568 116 - 22407834
AGCAUACAUUUUCCAAGCAU-CCUGUGAAAAAACCAUCACAAG--UUUU-CUUCGAACGGAAUGCCAAGUGCAUUCUGGAAGGAAAUGCUUGUACAUCUACAUAAUGCCAAUAAAGAAAA
.((((.........((((..-..(((((........))))).(--((((-((((...((((((((.....)))))))))))))))))))))(((....)))...))))............ ( -28.50)
>DroPse_CAF1 18372 111 - 1
CGAAUACAUUUUCCAAGCAUUCCUGUGAAAA-CUAGGCAGAAGGACUUUCCUUUGAA-GGAAUGCCAUGAUCAUUCCCUGGGGAAAUGUUUGAA-AUUU------UGCAAAUAAAGAAAA
(((..(((((((((..((((((((((....)-)......(((((.....)))))..)-)))))))...((....))....))))))))))))..-....------............... ( -26.60)
>DroSim_CAF1 25939 111 - 1
AGCAUACAUUUUCCAAGCAU-CCUGUGAAAAACCCCCCACAAG--UUUUCCUUCGAAUGGAAUGCCAAGUGCAUUCUGGAAGGAAAUGCUUGUACAUCU------UGCCAAUAAAGAAAA
.(((....(((((((.....-..)).))))).......(((((--(((((((((...((((((((.....)))))))))))))))).))))))......------)))............ ( -27.30)
>DroPer_CAF1 18205 111 - 1
CGAAUACAUGUUCCAAGCAUUCCUGUGAAAA-CUAGGCAGAAGGACUUUCCUUUGAA-GGAAUGCCACGACCAUUCCCUGGGGAAAUGUUUGAA-AUUU------UGCAAAUAAAGAAAA
((((((....((((..((((((((((....)-)......(((((.....)))))..)-))))))).....(((.....))))))).))))))..-....------............... ( -26.60)
>consensus
AGAAUACAUUUUCCAAGCAU_CCUGUGAAAA_CCAGGCACAAG__CUUUCCUUCGAA_GGAAUGCCAAGAGCAUUCCCGAAGGAAAUGCUUGAA_AUCU______UGCAAAUAAAGAAAA
.............((((((....((((..........)))).....((((((((...((((((((.....))))))))))))))))))))))............................ (-17.34 = -18.52 +   1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:21 2006