Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,735,330 – 7,735,450 |
Length | 120 |
Max. P | 0.965860 |
Location | 7,735,330 – 7,735,450 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 74.17 |
Mean single sequence MFE | -36.80 |
Consensus MFE | -22.37 |
Energy contribution | -24.17 |
Covariance contribution | 1.79 |
Combinations/Pair | 1.22 |
Mean z-score | -1.99 |
Structure conservation index | 0.61 |
SVM decision value | 1.59 |
SVM RNA-class probability | 0.965860 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7735330 120 - 22407834 AUUACAGUAUAGCAGCUGUAGUGCCCCUCAUAUAUACCGUGAAUUCAAUACACCCAGUGAUACCCUGGAUGAGUUGCAACAAUAGUUGGAAUACCCAGGAGUGUUCCUUGCACGAGAACU ..((((((......))))))((((...((((.......)))).............((..(((((((((....(((.((((....)))).)))..))))).))))..)).))))....... ( -30.80) >DroVir_CAF1 12676 120 - 1 ACUAUAGCAUCAAUGCGGCCGUGCCAUUUAUCUAUGCCGUCAAUUCGGUGCGUGAGGUCAUGCCUUGGAUGAGCUGCAAUAAUACGUGGAAUACGCCAGAGUGUUCCACACACGAUCAUU ......(.(((..(((((((((.(((.........((((......))))(((((....)))))..)))))).)))))).......(((((((((......)))))))))....))))... ( -41.00) >DroMoj_CAF1 12322 120 - 1 ACUAUAGCAUAAAUGCGGCUGUGCCAUUCAUCUAUGCCGUCAAUUCGCUGCGUAAAGUUUUGCCCUGGAUGAGCUGCAACAAUACGUGGAAUACGCCCGAGUGUUCCACGCACAGUGAAU ......(((....))).(((((((..........(((.((..(((((..(((........)))..)))))..)).))).......(((((((((......)))))))))))))))).... ( -38.60) >consensus ACUAUAGCAUAAAUGCGGCAGUGCCAUUCAUCUAUGCCGUCAAUUCGAUGCGUAAAGUCAUGCCCUGGAUGAGCUGCAACAAUACGUGGAAUACGCCAGAGUGUUCCACGCACGAUAAAU ......((......))((((((((..........(((.((..(((((..(((........)))..)))))..)).))).......(((((((((......)))))))))))))))))... (-22.37 = -24.17 + 1.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:20 2006