Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 792,673 – 792,776 |
Length | 103 |
Max. P | 0.629630 |
Location | 792,673 – 792,776 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 77.23 |
Mean single sequence MFE | -23.70 |
Consensus MFE | -15.25 |
Energy contribution | -15.37 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.30 |
Mean z-score | -1.31 |
Structure conservation index | 0.64 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.629630 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 792673 103 + 22407834 CAGGAAAGGAAAGGAAAUGAAAGUGGA--AGGGGAUGAGCUGGGG----AUUUCCCACGAUGACGAGGCGGGCUUAUCAUAAAAGUUUGUCGCGCAUUAAAAACAGAAA ...........................--..........((((((----....)))..((((.((.(((((((((.......))))))))).)))))).....)))... ( -21.10) >DroSec_CAF1 52444 100 + 1 CAGGAAGGGAAAGGAAAUGAAAGUGGG--AGGGGAUGAGCUGGGG----AUUCCCCACGAUGACGAGGCGGGCUUA---UAAAAGUUUGUCACGAAUUAAAAACAGAAA ......................((.(.--.(((((..........----..))))).).))..((.(((((((((.---...))))))))).))............... ( -19.20) >DroSim_CAF1 57092 103 + 1 CAGGAAGGGAAAGGAAAUGAAAGUGGG--AGGGGAUGAGCUGGGG----AUUCCCCACGAUGACGAGGCGGGCUUAUCAUAAAAGUUUGUCGCGCAUUAAAAACAGAAA ...........................--.(((((..........----..)))))..((((.((.(((((((((.......))))))))).))))))........... ( -22.20) >DroEre_CAF1 53816 93 + 1 CAGGAAAGGAA----------AGUGGG--CGGGGAUGAGCUGGGG----AUUCCCCACGGAGACGGGGCGGGCUUAUCAUAAAAGUUUGUCGCGCAUUAAAAACAGAAA ...........----------((((.(--((..((((((((((((----...)))).((....)).....))))))))((((....))))))).))))........... ( -27.80) >DroYak_CAF1 56217 96 + 1 CAGGAAAGUAA----------AGUGGGGAAGGGGAUGAACUGGGG-C--AUUUCCCACGAUGACGAGACGGGCUUAUCAUAAAAGUUUGUCGCGCAUUAAAAACAGAAA ...........----------.((((((((.((......))....-.--.))))))))((((.((.(((((((((.......))))))))).))))))........... ( -24.80) >DroAna_CAF1 51655 90 + 1 UCGGCAAGGCGGGAG-----AAGCUGG--CUGGGCUGCGAUGGGGGGAGCUUCUCUA--AUGAUG----GGGCUUAUCAUAAAAGUUUGUCGCGCAUUA------GGAG ........(((.((.-----(((((.(--(......)).((((...(((((((((..--..)).)----)))))).))))...))))).)).)))....------.... ( -27.10) >consensus CAGGAAAGGAAAGGA_____AAGUGGG__AGGGGAUGAGCUGGGG____AUUCCCCACGAUGACGAGGCGGGCUUAUCAUAAAAGUUUGUCGCGCAUUAAAAACAGAAA ........................................(((((.......))))).((((.((.(((((((((.......))))))))).))))))........... (-15.25 = -15.37 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:49 2006