Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,730,176 – 7,730,283 |
Length | 107 |
Max. P | 0.885868 |
Location | 7,730,176 – 7,730,283 |
---|---|
Length | 107 |
Sequences | 3 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 80.37 |
Mean single sequence MFE | -29.10 |
Consensus MFE | -23.04 |
Energy contribution | -24.60 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.08 |
Mean z-score | -1.84 |
Structure conservation index | 0.79 |
SVM decision value | 0.94 |
SVM RNA-class probability | 0.885868 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7730176 107 - 22407834 CUUUUACUUUGCCAGCUGCACACAUGCCUUCAGUUCGCUGAUCUUUUCGGAGCUCUCCACCUUUGGAAUACUUCAUGGCGGUUGGCGUAAGUACCCUUAACAAUAGC ....(((((((((((((((.((.......((((....)))).......((((...((((....))))...)))).)))))))))))).))))).............. ( -31.80) >DroPse_CAF1 13932 95 - 1 CUUUUACUUCGCCAGCUGCACCCAUGCCUUCACCCCGCUGAUGUUCUCGGAACUCCCCACCUUCGGCCUCGUACACGGCGGAUGGGGUAAGUGCC------------ .................((((...(((((.((..((((((.(((.(..((......))..(....)....).))))))))).))))))).)))).------------ ( -23.70) >DroSim_CAF1 21123 107 - 1 CUUUUACUUUGCCAGCUGCACACAUGCCUUCAGUUCGCUGAUCUUCUCGGAGCUCUCCACCUUUGGAAUACUUCAUGGCGGUUGGCGUAAGUACCAUUAACAAUAGC ....(((((((((((((((.((.......((((....)))).......((((...((((....))))...)))).)))))))))))).))))).............. ( -31.80) >consensus CUUUUACUUUGCCAGCUGCACACAUGCCUUCAGUUCGCUGAUCUUCUCGGAGCUCUCCACCUUUGGAAUACUUCAUGGCGGUUGGCGUAAGUACC_UUAACAAUAGC ....(((((((((((((((..........((((....)))).......((((...(((......)))...))))...)))))))))).))))).............. (-23.04 = -24.60 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:16 2006