| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,724,442 – 7,724,555 |
| Length | 113 |
| Max. P | 0.957495 |
| Location | 7,724,442 – 7,724,555 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 72.54 |
| Mean single sequence MFE | -25.05 |
| Consensus MFE | -8.00 |
| Energy contribution | -9.08 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.32 |
| SVM decision value | 1.48 |
| SVM RNA-class probability | 0.957495 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7724442 113 + 22407834 ACAAGGCAGAAGCACUUGACAAAUAUAGCAGCCAAUGGCUCAAAACAUGUCCGUUAUCAUCAACA---UCGGAUAG---UUCUGAAAGGGAUAACUUCAAUACAGUAAAGAUAUUG-CAA .((((((....)).)))).........((((((...)))........((((((((......))).---(((((...---.)))))...))))).....................))-).. ( -21.40) >DroSec_CAF1 13000 113 + 1 ACAAGGCGGAAGCACUUGACAAAUAUAGCAGCCAAUGGCUCAAAAUAUUUGCGUUAUCUUCAGCA---UCAGAGAG---UUCUGAAAAGGAUAAUUUUAAUACAGUGAAGAUAAUG-CAA .((((((....)).))))..((((((...((((...))))....))))))((((((((((((...---..(((..(---((((....)))))..)))........)))))))))))-).. ( -33.42) >DroSim_CAF1 15399 113 + 1 ACAAGGCGGAAGCACUUGACAAAUAUAGCAGCCAAUGGCUCAAAAUAUGUGCGUUAUCUUCAGCA---UCAGAGAG---UUCUGAAAAGGAUAAUUUCAAUACAGUGAAGAUAAUG-CAA .((((((....)).)))).........(.((((...)))))........(((((((((((((...---...(((((---((((....)))))..)))).......)))))))))))-)). ( -34.92) >DroYak_CAF1 7816 116 + 1 UCAAGACAGAAGCACUUGACAAAUAUAUCAGCCAAUGGUGCAAUGAAUAUGUGAUCACUUCAUCACUUUCAGAGAG---UUCUGAAAGGGAUAAUAUCAAUAAAAUGUAGAUUAUG-CUA ......(((((((((((((........)))......)))))..((((...(((((......))))).)))).....---)))))...((.(((((..((......))...))))).-)). ( -20.60) >DroAna_CAF1 7294 107 + 1 CCAUGGCACUGGCACUGGACAAAAAUAACAACCAAUGGUUGAGCACAUG---GUUCUCAUAUGAU---UCUGUUACUAUCUCUGAAAA-------UUCAUAACAUUAAAUACAUUUAUAG (((((((..((........)).......(((((...))))).)).))))---)......((((((---((.............)))..-------.)))))................... ( -14.92) >consensus ACAAGGCAGAAGCACUUGACAAAUAUAGCAGCCAAUGGCUCAAAACAUGUGCGUUAUCUUCAGCA___UCAGAGAG___UUCUGAAAAGGAUAAUUUCAAUACAGUGAAGAUAAUG_CAA .((((((....)).))))...........((((...))))............................((((((.....))))))................................... ( -8.00 = -9.08 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:10 2006