Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,719,548 – 7,719,701 |
Length | 153 |
Max. P | 0.534254 |
Location | 7,719,548 – 7,719,668 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.89 |
Mean single sequence MFE | -27.23 |
Consensus MFE | -24.52 |
Energy contribution | -24.97 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.03 |
Mean z-score | -1.68 |
Structure conservation index | 0.90 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.534254 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7719548 120 + 22407834 AUAGCGUCGAUUUGUUGUUGUAGACACUGAAAAUUUGCAUAGCUAUAAAAGUUGUUAGCAGUUAAAAGUAUUAACAUCCGUUAAUAGCAAAGUGUACCCCCUUACUUUGUUAGAUUGAUG ....((((((((((((......)))(((......((((((((((.....))))))..)))).....)))((((((....))))))(((((((((........)))))))))))))))))) ( -25.00) >DroSec_CAF1 8232 120 + 1 AUCGCGUCGAUUUGUAGUUGUAGACACUGAACAUUUGCAUAGCUAUAAAACUUGUUAGCAGCUAAAAGUAUUAACAGCCAUUACUAGCAAAGUUUACCCCCUUACUUUGCUAGAUUGAUA .....((((((.....(((((.((.(((......((((.((((..........)))))))).....))).)).))))).....((((((((((..........)))))))))))))))). ( -28.00) >DroSim_CAF1 10426 120 + 1 AUCGCGUCGAUUUGUAGUUGUAGACACUGAACAUUUGCAUAGCUAUAAAACUUGUUAGCAGUUAAAAGUAUUAACAGCCGUUACUAGCAAAGUUUACCCCCUUACUUUGCUAGAUUGAUA .....((((((.....(((((.((.(((......((((.((((..........)))))))).....))).)).))))).....((((((((((..........)))))))))))))))). ( -28.70) >consensus AUCGCGUCGAUUUGUAGUUGUAGACACUGAACAUUUGCAUAGCUAUAAAACUUGUUAGCAGUUAAAAGUAUUAACAGCCGUUACUAGCAAAGUUUACCCCCUUACUUUGCUAGAUUGAUA .....((((((.....(((((.((.(((......((((.((((..........)))))))).....))).)).))))).....((((((((((..........)))))))))))))))). (-24.52 = -24.97 + 0.45)
Location | 7,719,588 – 7,719,701 |
---|---|
Length | 113 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.78 |
Mean single sequence MFE | -24.13 |
Consensus MFE | -17.84 |
Energy contribution | -18.40 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.08 |
Mean z-score | -1.98 |
Structure conservation index | 0.74 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.510005 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7719588 113 + 22407834 AGCUAUAAAAGUUGUUAGCAGUUAAAAGUAUUAACAUCCGUUAAUAGCAAAGUGUACCCCCUUACUUUGUUAGAUUGAUGGCAUCGUUGAAAAGUAUAUA-------AGGGGUAUUAAUA ..........(((((((((.(((((.....)))))....))))))))).....(((((((..((((((....(((.......))).....))))))....-------.)))))))..... ( -24.00) >DroSec_CAF1 8272 120 + 1 AGCUAUAAAACUUGUUAGCAGCUAAAAGUAUUAACAGCCAUUACUAGCAAAGUUUACCCCCUUACUUUGCUAGAUUGAUAGCUUCGUUGAAAACUAUGUAAUUAUUAAAAAGUAUUAAAA .((((..........)))).......(((.((((((((.((((((((((((((..........))))))))))..)))).)))..)))))..)))......................... ( -22.20) >DroSim_CAF1 10466 120 + 1 AGCUAUAAAACUUGUUAGCAGUUAAAAGUAUUAACAGCCGUUACUAGCAAAGUUUACCCCCUUACUUUGCUAGAUUGAUAGCUUCGUUGAAAACUAUGUAAUUAUUAAAAAGUAUUAAAA .....(((.((((.((((.(((((..(((.((((((((..(((((((((((((..........))))))))))..)))..)))..)))))..)))...))))).)))).)))).)))... ( -26.20) >consensus AGCUAUAAAACUUGUUAGCAGUUAAAAGUAUUAACAGCCGUUACUAGCAAAGUUUACCCCCUUACUUUGCUAGAUUGAUAGCUUCGUUGAAAACUAUGUAAUUAUUAAAAAGUAUUAAAA .((((..........))))...........((((((((.((((((((((((((..........))))))))))..)))).)))..))))).............................. (-17.84 = -18.40 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:09 2006