Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,716,126 – 7,716,238 |
Length | 112 |
Max. P | 0.575706 |
Location | 7,716,126 – 7,716,238 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.81 |
Mean single sequence MFE | -24.20 |
Consensus MFE | -23.06 |
Energy contribution | -22.88 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.04 |
Mean z-score | -1.28 |
Structure conservation index | 0.95 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.575706 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7716126 112 - 22407834 UCUUAAUCAUUUCU--------UAUUUCAGUUGUUGGUAUGCUGCCGUAUUUUUUGUAUAUGGUGAUCUACUUGGUACCAAUCCUGGUCGUUCAUUCCUUCAUGGGACAGUUCUCCAGCA ..............--------.........((((((...((((((((((.......))))))(((.(.(((.((.......)).))).).))).((((....))))))))...)))))) ( -23.80) >DroSec_CAF1 4600 112 - 1 CCUUAAUCAUUUCU--------UAUUUCAGUUGUUGGUAUGCUGCCGUAUUUUUUGUAUAUGGUGAUCUACUUGGUACCAAUCCUGGUCGUUCAUUCCUUCAUGGGACAGUUCUCCAGCA ..............--------.........((((((...((((((((((.......))))))(((.(.(((.((.......)).))).).))).((((....))))))))...)))))) ( -23.80) >DroSim_CAF1 5128 112 - 1 UCUUAAUCAUUUAU--------UAUUUCAGUUGUUGGUAUGCUGCCGUAUUUUUUGUAUAUGGUGAUCUACUUGGUACCAAUCCUGGUCGUUCAUUCCUUCAUGGGACAGUUCUCCAGCA ..............--------.........((((((...((((((((((.......))))))(((.(.(((.((.......)).))).).))).((((....))))))))...)))))) ( -23.80) >DroEre_CAF1 5229 120 - 1 UUUAAAACAUUUCAUUUGGUCCCAUUUCAGUUGUUGGCAUGCUACCGUAUUUUUUGUAUAUGGUGAUCUACUUGGUUCCAAUCCUGGUCGUUCAUUCCUACAUGGGACAGUUCUCCAGCA ..................(((((((...((..((..((.....(((((((.......)))))))((((...(((....)))....))))))..))..))..)))))))............ ( -25.40) >consensus UCUUAAUCAUUUCU________UAUUUCAGUUGUUGGUAUGCUGCCGUAUUUUUUGUAUAUGGUGAUCUACUUGGUACCAAUCCUGGUCGUUCAUUCCUUCAUGGGACAGUUCUCCAGCA ...............................((((((...((((((((((.......)))))))((((...(((....)))....))))......((((....)))).)))...)))))) (-23.06 = -22.88 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:07 2006