Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,715,234 – 7,715,394 |
Length | 160 |
Max. P | 0.594322 |
Location | 7,715,234 – 7,715,354 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.83 |
Mean single sequence MFE | -36.00 |
Consensus MFE | -30.01 |
Energy contribution | -30.23 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.07 |
Mean z-score | -1.97 |
Structure conservation index | 0.83 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.594322 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7715234 120 - 22407834 GGAAUUUAUUCGACUUUUAUAAUGGCUCUACAAGCCUUUGGAGCUGGCUGGGGUAGUGUAAUAGCCCUGUCCAGUUUCAACGGAUUUAAGACAGACAUAAUGUCGUAUAGUUGGAUUAUU .......((((((((..(((...((((.....)))).((((((((((.((((((.........)))))).)))))))))).........((((.......))))))).)))))))).... ( -35.10) >DroSim_CAF1 4239 120 - 1 GGAGUUUAUUCGACUUUUAUAAUGGCUCUACAAGCGUUUGGAGCUGGCUGGGGCAGUGUAAUAGCCCUGUCCAGUUUCAACGGAUUUAAGACAGACAUCAUGUCGUAUAGUUGGAUUAUU .......((((((((..(((..............((((.((((((((.((((((.........)))))).)))))))))))).......((((.......))))))).)))))))).... ( -34.90) >DroEre_CAF1 4345 120 - 1 GGACUUUCUUCGACAUAUGUAAUGGCGCUUCAAGCCUUUGGAGCUGGCUGGGGUAGUGUAAUAGCCCUGUCCAGUUUUAAUGGGUUCAAGACUAACAUCAUGUCGUAUAGUUGGAUUAUU .((((.....((((((((((..(((..(((.((.((.((((((((((.((((((.........)))))).)))))))))).)).)).))).))))))).))))))...))))........ ( -38.00) >consensus GGAAUUUAUUCGACUUUUAUAAUGGCUCUACAAGCCUUUGGAGCUGGCUGGGGUAGUGUAAUAGCCCUGUCCAGUUUCAACGGAUUUAAGACAGACAUCAUGUCGUAUAGUUGGAUUAUU ........((((((....................((.((((((((((.((((((.........)))))).)))))))))).))......((((.......)))).....))))))..... (-30.01 = -30.23 + 0.23)
Location | 7,715,274 – 7,715,394 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.00 |
Mean single sequence MFE | -36.22 |
Consensus MFE | -28.72 |
Energy contribution | -29.07 |
Covariance contribution | 0.35 |
Combinations/Pair | 1.17 |
Mean z-score | -1.97 |
Structure conservation index | 0.79 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.518627 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7715274 120 - 22407834 GUGGAUGUAUAUAACUCCGAAUACAAAGGAUUUUUCGGAGGGAAUUUAUUCGACUUUUAUAAUGGCUCUACAAGCCUUUGGAGCUGGCUGGGGUAGUGUAAUAGCCCUGUCCAGUUUCAA ((.((.........(((((((............))))))).........)).)).........((((.....)))).((((((((((.((((((.........)))))).)))))))))) ( -37.27) >DroSim_CAF1 4279 120 - 1 GUGGAGGUAUAUAACUCCGAAUACAAAUGAUUUUUCAGAGGGAGUUUAUUCGACUUUUAUAAUGGCUCUACAAGCGUUUGGAGCUGGCUGGGGCAGUGUAAUAGCCCUGUCCAGUUUCAA ((((((.((((((((((.(((............))).))).(((((.....))))))))).))).))))))......((((((((((.((((((.........)))))).)))))))))) ( -37.90) >DroEre_CAF1 4385 120 - 1 GUGGAGGUAUAUAACUCCAAGGACAAAAGAUUUUUCAGAAGGACUUUCUUCGACAUAUGUAAUGGCGCUUCAAGCCUUUGGAGCUGGCUGGGGUAGUGUAAUAGCCCUGUCCAGUUUUAA .(((((........)))))...(((...((....)).(((((....)))))......)))...(((.......))).((((((((((.((((((.........)))))).)))))))))) ( -33.50) >consensus GUGGAGGUAUAUAACUCCGAAUACAAAAGAUUUUUCAGAGGGAAUUUAUUCGACUUUUAUAAUGGCUCUACAAGCCUUUGGAGCUGGCUGGGGUAGUGUAAUAGCCCUGUCCAGUUUCAA ((((((.(((((((...((((((.....(((((((....)))))))))))))....)))).))).))))))......((((((((((.((((((.........)))))).)))))))))) (-28.72 = -29.07 + 0.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:06 2006