Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,710,822 – 7,710,919 |
Length | 97 |
Max. P | 0.500000 |
Location | 7,710,822 – 7,710,919 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 74.98 |
Mean single sequence MFE | -23.96 |
Consensus MFE | -7.40 |
Energy contribution | -7.56 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.24 |
Mean z-score | -1.68 |
Structure conservation index | 0.31 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7710822 97 - 22407834 UAAACGAGCGAGUGAACAUGAGUUUG----------UUUCUGUCAAGAGAGGAGCAUGUUUAAAGCACUCGAGUACAACAGAGCGUAUGAGUUUU----ACAUCUGGCAAA ....((((.(..((((((((...((.----------(((((....))))).)).))))))))...).)))).......((((..(((.......)----)).))))..... ( -26.10) >DroSec_CAF1 3491 95 - 1 UAAACGAGCGAGUGAGUGUGAGAUUG----------UUUCUGUCAAG--AGGAACAUGUUUAAAGCACUCGAGUACAACAGAGCGUAUGAGUAAU----ACAUCUCGCAAA .......((((((((((((.((((((----------(((((......--))))))).))))...))))))).............((((.....))----))..)))))... ( -27.50) >DroSim_CAF1 3178 95 - 1 UAAACGAGCGAGAGAAUGUGAGAUUG----------UUUCUGUCAAG--AGGAACAUGUUUAAAGCACUCGAGUACAACAGAGCGUAUGAGUUAU----ACAUGUCGCAAA ...((...((((.(....((((..((----------(((((......--)))))))..))))...).)))).))........(((((((......----.)))).)))... ( -19.40) >DroEre_CAF1 3480 89 - 1 CAAACGAGCGAGUGAACGUGAACUUGUGAGUU---AUUUCUGUCAAG--AGAAACAAGU-CGAAACACUCGAGUACAACAGAGCGUAUGAGUUUU---------------- .((((...((((((....(((.(((((.....---.(((((....))--))).))))))-))...)))))).((((........))))..)))).---------------- ( -19.40) >DroYak_CAF1 3503 103 - 1 ------AGCGAGUAAAUUUGAGUUUGUGAGCUUGUUUUUCUGUCAAG--UGCAACAUGUUCAAAACACUCGUGUACAACAGAGCGUAUGAGUAAUGGAUACAUCGCGAAAA ------.(((((((..((((((..(((..(((((.........))))--)...)))..))))))..(((((((..(......)..)))))))......))).))))..... ( -27.40) >consensus UAAACGAGCGAGUGAAUGUGAGAUUG__________UUUCUGUCAAG__AGGAACAUGUUUAAAGCACUCGAGUACAACAGAGCGUAUGAGUUAU____ACAUCUCGCAAA ........((((((....((((..((..........(((((........)))))))..))))...)))))).((((........))))....................... ( -7.40 = -7.56 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:00 2006