Locus 274

Sequence ID	2L_DroMel_CAF1
Location	790,050 – 790,141
Length	91
Max. P	0.976192

overview

Window 7

Location	790,050 – 790,141
Length	91
Sequences	5
Columns	91
Reading direction	forward
Mean pairwise identity	96.37
Mean single sequence MFE	-35.80
Consensus MFE	-34.46
Energy contribution	-34.18
Covariance contribution	-0.28
Combinations/Pair	1.11
Mean z-score	-1.52
Structure conservation index	0.96
SVM decision value	1.77
SVM RNA-class probability	0.976192
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 790050 91 + 22407834
AUACGAGUAUCUAGUAGAUACGCCGACAAGGGCAUGGGUUAGCCCCCGUUUUCGCCGCCUCCACUCCUCCGUCGCUGCGGUUCAGUGGGGU
...((((((((.....)))))(((......)))(((((......)))))..)))..(((.(((((...((((....))))...)))))))) ( -31.40)
>DroSec_CAF1 49872 91 + 1
AUACGAGUAUCUAGCAGAUACGCCGGCAAGGGCAUGGGUUAGCCCCCGUUUUCGCCGCCUCCACUCCUCCGCCCCUGCGGUUCAGUGGGGU
......(((((.....)))))..((((.(((((..(((....)))..))))).)))).(((((((...((((....))))...))))))). ( -35.80)
>DroSim_CAF1 54301 91 + 1
AUACGAGUAUCUAGCAGAUACGCCGGCAAGGGCAUGGGUUAGCCCCCGUUUUCGCCGCCUCCACUCCUCCGCCGCUGCGGUUCAGUGGGGU
......(((((.....)))))..((((.(((((..(((....)))..))))).)))).(((((((...((((....))))...))))))). ( -35.80)
>DroEre_CAF1 51223 91 + 1
AUACGAGUAUCUAGCAGAUACGCCGGCAAGGGCAUGGGUUAGCCCCCGUUCUCGCCGCCUCCACUCCUCCGCCGCUGCGGUUCAGUGGGGU
......(((((.....)))))..((((.(((((..(((....)))..))))).)))).(((((((...((((....))))...))))))). ( -38.30)
>DroYak_CAF1 53631 91 + 1
AUACGAGUAUCUAGUAGAUACGCCGGCAAGGGCAUGGGUUAGCCCCCGUUUUUGCUGCCUCCACUCCUCCGCCUCUGCGGUUCAGUGGGGU
......(((((.....)))))..((((((((((..(((....)))..)))))))))).(((((((...((((....))))...))))))). ( -37.70)
>consensus
AUACGAGUAUCUAGCAGAUACGCCGGCAAGGGCAUGGGUUAGCCCCCGUUUUCGCCGCCUCCACUCCUCCGCCGCUGCGGUUCAGUGGGGU
......(((((.....)))))..((((.(((((..(((....)))..))))).)))).(((((((...((((....))))...))))))). (-34.46 = -34.18 +  -0.28)

alignment

secondary structure

dotplot

Window 8

Location	790,050 – 790,141
Length	91
Sequences	5
Columns	91
Reading direction	reverse
Mean pairwise identity	96.37
Mean single sequence MFE	-35.12
Consensus MFE	-32.92
Energy contribution	-33.00
Covariance contribution	0.08
Combinations/Pair	1.08
Mean z-score	-1.24
Structure conservation index	0.94
SVM decision value	0.52
SVM RNA-class probability	0.766676
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 790050 91 - 22407834
ACCCCACUGAACCGCAGCGACGGAGGAGUGGAGGCGGCGAAAACGGGGGCUAACCCAUGCCCUUGUCGGCGUAUCUACUAGAUACUCGUAU
.(((((((...(((......)))...))))).))..((((..((((((((........))))))))....(((((.....))))))))).. ( -32.90)
>DroSec_CAF1 49872 91 - 1
ACCCCACUGAACCGCAGGGGCGGAGGAGUGGAGGCGGCGAAAACGGGGGCUAACCCAUGCCCUUGCCGGCGUAUCUGCUAGAUACUCGUAU
...(((((...((((....))))...))))).(.(((((......(((((........)))))))))).)(((((.....)))))...... ( -35.50)
>DroSim_CAF1 54301 91 - 1
ACCCCACUGAACCGCAGCGGCGGAGGAGUGGAGGCGGCGAAAACGGGGGCUAACCCAUGCCCUUGCCGGCGUAUCUGCUAGAUACUCGUAU
...(((((...((((....))))...))))).(.(((((......(((((........)))))))))).)(((((.....)))))...... ( -35.50)
>DroEre_CAF1 51223 91 - 1
ACCCCACUGAACCGCAGCGGCGGAGGAGUGGAGGCGGCGAGAACGGGGGCUAACCCAUGCCCUUGCCGGCGUAUCUGCUAGAUACUCGUAU
...(((((...((((....))))...))))).(.(((((((..(((((.....))).))..))))))).)(((((.....)))))...... ( -38.00)
>DroYak_CAF1 53631 91 - 1
ACCCCACUGAACCGCAGAGGCGGAGGAGUGGAGGCAGCAAAAACGGGGGCUAACCCAUGCCCUUGCCGGCGUAUCUACUAGAUACUCGUAU
.(((((((...((((....))))...))))).))..((.....(((((((........)))))))...))(((((.....)))))...... ( -33.70)
>consensus
ACCCCACUGAACCGCAGCGGCGGAGGAGUGGAGGCGGCGAAAACGGGGGCUAACCCAUGCCCUUGCCGGCGUAUCUGCUAGAUACUCGUAU
...(((((...((((....))))...))))).(.(((((......(((((........)))))))))).)(((((.....)))))...... (-32.92 = -33.00 +   0.08)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:48 2006