Locus 2739

Sequence ID 2L_DroMel_CAF1
Location 7,707,061 – 7,707,176
Length 115
Max. P 0.539501
window4352

overview

Window 2

Location 7,707,061 – 7,707,176
Length 115
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 80.35
Mean single sequence MFE -30.12
Consensus MFE -17.97
Energy contribution -17.78
Covariance contribution -0.19
Combinations/Pair 1.35
Mean z-score -1.64
Structure conservation index 0.60
SVM decision value 0.01
SVM RNA-class probability 0.539501
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7707061 115 + 22407834
UU--UAUCGAUUUGGUAACUUUUCCAAGGUGGCCCCUGGGACUUUCCACACAAUCAAAUUCCUGGCAUCAUUUGCAAUGAUGCCGAGAGCCAAUCUGCUCGUAUAUACGGUAAUAGA
.(--(((((.(((((........)))))((((((....)).....))))((...........(((((((((.....))))))))).((((......)))))).....)))))).... ( -31.00)
>DroVir_CAF1 1951 106 + 1
A--------AAU---UAUCUGUAUACAGGUGGCAGAUAAUAACUAUCAUACCAUUAAAUUUCUGGCUUCCUUUGCCAUGAUGCCACGUGCCAAGCUGCUCGUCUAUAUGAUAGUCAA
.--------.((---(((((((.........))))))))).(((((((((..........((((((.......)))).))....(((.((......)).)))...)))))))))... ( -26.90)
>DroSec_CAF1 1671 115 + 1
UU--UAUCGAAUUGGUAACUUUUGCAAGGUGGCCGAUGGGACUUUCCACACAAUCAAAUUCCUGGCAUCAUUUGCAAUGAUGCCGAGAGCCAAGUUGCUCGUAUAUACGGUAGUAGA
.(--(((((.....(((......((((..((((.(((.((.....)).....)))....((.(((((((((.....))))))))).))))))..))))...)))...)))))).... ( -31.50)
>DroSim_CAF1 1661 115 + 1
UU--UAUCGAAUUGGUUACUUUUCCAAGGUGUCCGAUGGGACUUUCCACACAAUCAAAUUCCUGGCAUCAUUUGCAAUGAUGCCGAGAGCCAAGCUGCUCGUAUAUACGGUAGUAGA
..--.......((((((.(((......((.((((....))))...))................((((((((.....)))))))))))))))))(((((.(((....))))))))... ( -34.60)
>DroEre_CAF1 1661 115 + 1
UC--UAAUGAUUUGUCAACUUUCACAAGGUGACCGAUGGCACUUUCCACACAAUCAAAUUCCUGGCAUCGUUCGCAAUGAUGCCGAGAGCCAAGUUGCUCGUAUAUACGGUUGUAGA
..--........(((((.(..((((...))))..).)))))........((((((.......(((((((((.....))))))))).((((......))))........))))))... ( -29.30)
>DroYak_CAF1 1658 117 + 1
UCAUCAUUAAUUUAUUAAUUUUCCCAAGGUGGCCGAUGGGACUUUCCACACAAUCAAAUUCCUGGCAUCGUUUGCAAUGAUGCCGAGAGCCAAGCUGCUUGUAUAUACGGUUGUAGA
.....................(((((.((...))..)))))........((((((.......(((((((((.....))))))))).((((......))))........))))))... ( -27.40)
>consensus
UU__UAUCGAAUUGGUAACUUUUCCAAGGUGGCCGAUGGGACUUUCCACACAAUCAAAUUCCUGGCAUCAUUUGCAAUGAUGCCGAGAGCCAAGCUGCUCGUAUAUACGGUAGUAGA
...........................(((......((((....))))...........((.(((((((((.....))))))))).)))))...((((((((....))))..)))). (-17.97 = -17.78 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:59 2006