Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,703,400 – 7,703,512 |
Length | 112 |
Max. P | 0.939871 |
Location | 7,703,400 – 7,703,512 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 96.61 |
Mean single sequence MFE | -27.30 |
Consensus MFE | -24.74 |
Energy contribution | -25.02 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.06 |
Mean z-score | -1.57 |
Structure conservation index | 0.91 |
SVM decision value | 1.30 |
SVM RNA-class probability | 0.939871 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7703400 112 - 22407834 UUUAAUCUGCCGUCUUGUUUCGGUCUUGUCAGCUUAUUAUGACAGUAAUAAAACCCAGGGCUAAUUUCUUGAUUACAUGUUGUUAAUUACAGAUCUGCGUGGCGGCAUCUUC .......(((((((.(((...((((((((((........)))))(((((.((...((..(.(((((....)))))).))...)).)))))))))).))).)))))))..... ( -27.10) >DroSec_CAF1 48349 112 - 1 UUUCAUCUGCCGUCUUGUUUCGGUCUUUUCAGCUUAUUAUGACAGUAAUAAAACCCAGGGCUAAUUUCUUGAUUACAUGUUGUUAAUUACAGAUCUGCGUGGCGGCAUCUUC .......(((((((.(((...(((((...(((((((((((....)))))))....(((((......))))).......))))........))))).))).)))))))..... ( -24.60) >DroSim_CAF1 48791 112 - 1 UUUCAUCUGCCGUCUUGUUUCGGUCUUGUCAGCUUAUUAUGACAGUAAUAAAACCCAGGGCUAAUUUCUUGAUUACAUGUUGUUAAUUACAGAUCUGCGUGGCGGCAUCUUC .......(((((((.(((...((((((((((........)))))(((((.((...((..(.(((((....)))))).))...)).)))))))))).))).)))))))..... ( -27.10) >DroEre_CAF1 58390 111 - 1 UUUCAUCUGCCGUCUUGU-UCGGUCUUGUCAGCUUAUUAUGACAGUAAUAAAACCCAGGGCUGAUUUCAUGAUUACAUGUUGUUAAUUACAGAUCUUCAUGGCGGCAUCGUC .......(((((((.((.-..((((((((((........)))))(((((....(....)..((((..((((....))))..))))))))))))))..)).)))))))..... ( -29.30) >DroYak_CAF1 50569 112 - 1 UUUCAUCUGCCGUCUUGUUUCGGUCUUGUCAGCUUAUUAUGACAGCAAUAAAACCCAGGGCUAAUUUCUUGAUUACAUGUUGUUAAUUACAGAUCUGCGUGGCGGCAUCGUC .......(((((((.(((...(((((.((((........))))(((((((.....(((((......)))))......)))))))......))))).))).)))))))..... ( -28.40) >consensus UUUCAUCUGCCGUCUUGUUUCGGUCUUGUCAGCUUAUUAUGACAGUAAUAAAACCCAGGGCUAAUUUCUUGAUUACAUGUUGUUAAUUACAGAUCUGCGUGGCGGCAUCUUC .......(((((((.(((...((((((((((........)))))(((((.((...((..(.(((((....)))))).))...)).)))))))))).))).)))))))..... (-24.74 = -25.02 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:58 2006