| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,685,726 – 7,685,835 |
| Length | 109 |
| Max. P | 0.919814 |
| Location | 7,685,726 – 7,685,835 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 79.04 |
| Mean single sequence MFE | -23.17 |
| Consensus MFE | -16.02 |
| Energy contribution | -15.05 |
| Covariance contribution | -0.97 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.69 |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.919814 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7685726 109 + 22407834 CCUGUAAAUAAACAUAUUAUCAUAU-----ACUACUUUCAGGCAGCCUUGAGGAAACUUAACAACAUCUCUUCUGGAGAUACAAUACGUCUACCUAAAUCGGUGCCAAAUAACA .........................-----..........((((.(((((((....)))))....(((((.....)))))....................))))))........ ( -19.20) >DroPse_CAF1 28793 109 + 1 CCUAGAAAUCA-----CUAACAAAAACCUUUUUAUUUGCAGGCUGCUCGGAAGAGGCUCCAGGCCAUAGCCUCCGGCGACACCAUACGCCUGCCCAAGCCGGUGGCCAACAACA ...........-----...................(((..(((..(.(((....(((...((((....))))..((((........)))).)))....))))..)))..))).. ( -30.70) >DroSec_CAF1 30362 109 + 1 CCUGUAAAUAAUCAUAUUAUCAAAU-----GCUACUUUCAGGCAGGGUUGAGGAAACUUAACAACAUCUCUUCUGGAGAUACAAUACGCCUACCCAAAUCGGUGCCGAAUAACA .........................-----......(((.((((((((((((....))))))...(((((.....)))))........)))(((......)))))))))..... ( -23.90) >DroSim_CAF1 30781 109 + 1 CCUGUAAAUAAUCAUAUUAUCAAAU-----ACUACUUUCAGGCAGCCUUGAGGAAACUUAACAACAUCUCUUCUGGAGAUACAAUACGCCUACCCAAAUCGGUGCCGAAUAACA .........................-----......(((.((((.(((((((....)))))....(((((.....)))))....................)))))))))..... ( -19.50) >DroEre_CAF1 38887 107 + 1 CCUGUAAAUA-ACGCAUUAUUAU-U-----ACUAUUUGCAGGCAGCCUUGAGAAAACUCAACAACCUCUCUUCUGGAGACACAAUACGCCUACCCAAAUCGGUGCCGAAUAACA ..((((((((-............-.-----..))))))))((((.(((((((....))))).....((((.....)))).....................))))))........ ( -19.36) >DroYak_CAF1 31790 109 + 1 CCUGUAAAUAAACGCACUUCUAUAU-----ACUAUUUGCAGGCAGCGCUGAGGAAACUCAACAACCUCUCCUCUGGAGAUACCAUACGCCUACCCAAAUCGGUGCCGAAUAACA ((((((((((...............-----..))))))))))..(((.((((....))))......(((((...))))).......))).........(((....)))...... ( -26.33) >consensus CCUGUAAAUAAACAUAUUAUCAAAU_____ACUACUUGCAGGCAGCCUUGAGGAAACUCAACAACAUCUCUUCUGGAGAUACAAUACGCCUACCCAAAUCGGUGCCGAAUAACA .......................................((((.....((((....))))......(((((...)))))........))))(((......)))........... (-16.02 = -15.05 + -0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:55 2006