| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,679,876 – 7,679,971 |
| Length | 95 |
| Max. P | 0.968142 |
| Location | 7,679,876 – 7,679,971 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 76.72 |
| Mean single sequence MFE | -25.17 |
| Consensus MFE | -15.25 |
| Energy contribution | -15.25 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.61 |
| SVM decision value | 1.62 |
| SVM RNA-class probability | 0.968142 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7679876 95 - 22407834 UCGGCGGAAUGCCGAUAUACAAGG-AC-GUUUUAUCGGUAUUUCGGAAUAAAACUGUGAACAGAAGAAG--A---CAUGACAUGGGAG--CCGAACAAGUAAUC (((((((((((((((((.((....-..-))..)))))))))))).........(((....)))......--.---............)--)))).......... ( -29.10) >DroSec_CAF1 24439 98 - 1 UCGGCGGAAUGCCGAUAUACAAAG-AG-GUUUUAUCGGUAUUUCGGAAUUAAACUGUGAACAGAAGAAG--ACUACAUGACAUGGGAG--CCGAACAAGUAAUA (((((((((((((((((.((....-..-))..)))))))))))).........(((....)))......--................)--)))).......... ( -29.00) >DroEre_CAF1 33012 98 - 1 UCGGCGGAAUGCCGAUACACAAAA-AG-GUUUUAUCGGCAUUUUGGAAUUAAACUGUGCAGAGAAGAAG--ACUACAUGACAUGGCAG--CCAAACAAGUAAUA ..(((((((((((((((.((....-..-))..)))))))))))).........(((((((.((......--.))...)).)))))..)--))............ ( -24.10) >DroYak_CAF1 25862 97 - 1 UCGGCGGAAUGCCGAUACACAA-A-AG-GUUUUAUCGGUAUUUCGGAAUUAAACUGUGAACAGAAUGAG--ACUACAUGACAUGAGAG--CCAAACAAGUAAUC ..(((((((((((((((.((..-.-..-))..))))))))))))((..(((..(((....)))..))).--.)).............)--))............ ( -25.00) >DroAna_CAF1 28596 101 - 1 UCGCCAGAAUGCCGAUACACAAAA-AGGGUCUUAUCGGUAUUUGGGAAUCGCAUUGCGAACAGAAGAACACACUACAUGACACGGCAA--CCGAACAGGUGAUA ..(((.(((((((((((.((....-...))..))))))))))).....((((...))))........................))).(--((.....))).... ( -23.60) >DroPer_CAF1 26076 85 - 1 UCAUUGGAAUGCCGAUAUACAAAGCAG-GUCUUAUCGGUAUCUGAGCAUCGAAUC------------------GACACGACAAGGCAGCACCAAACAGGUGAUA ...(..((.((((((((.((.......-))..))))))))))..)((.(((....------------------....)))....))..((((.....))))... ( -20.20) >consensus UCGGCGGAAUGCCGAUACACAAAA_AG_GUUUUAUCGGUAUUUCGGAAUUAAACUGUGAACAGAAGAAG__ACUACAUGACAUGGCAG__CCAAACAAGUAAUA ....(((((((((((((.((........))..)))))))))))))........................................................... (-15.25 = -15.25 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:53 2006