Locus 2732

Sequence ID 2L_DroMel_CAF1
Location 7,676,846 – 7,676,937
Length 91
Max. P 0.672319
window4345

overview

Window 5

Location 7,676,846 – 7,676,937
Length 91
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 91.36
Mean single sequence MFE -29.32
Consensus MFE -24.77
Energy contribution -25.08
Covariance contribution 0.31
Combinations/Pair 1.22
Mean z-score -1.76
Structure conservation index 0.85
SVM decision value 0.29
SVM RNA-class probability 0.672319
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7676846 91 + 22407834
GGUCAAAAGCUGAGCUCGCUCAGCUGGCUAAGCUGCCCCGGCUAGUCCGCAUGUUGCUCCUGCUAAGCAGACUUGCAGGAUAAUCCUAAUU
((((...(((((((....)))))))(((......)))..)))).(((((((..(((((.......)))))...))).)))).......... ( -31.60)
>DroSec_CAF1 21504 91 + 1
GGUCAAAAGCUGUGCUCGCUCAGCUGGCUAAGCUGCUCCGGCUAGUCCGCAUGUUGCUCCUGCUAAGCACACUUGCUGGAUAAUCCUAAUU
(((((...((((.(....).))))))))).(((((...))))).(((((((.((((((.......)))).)).))).)))).......... ( -25.00)
>DroSim_CAF1 21700 91 + 1
GGUCAAAAGCUGAGCUCGCUCAGCUGGCUAAGCUGCCCCGGCUAGUCCGCAUGUUGCUCCUGCUAAGCACACUUGCUGGAUAAUCCUAAUU
((((...(((((((....)))))))(((......)))..)))).(((((((.((((((.......)))).)).))).)))).......... ( -31.10)
>DroEre_CAF1 30057 90 + 1
GGUCAAAAGCUGAGUUCGCUCAGCUGGCUAAGCUGCC-CGACUCGUCCGCAUGUUGCUCCUGCUAAGCACACUCGCAGGAUAAUCCUAAUU
((((...(((((((....)))))))(((......)))-.)))).((((((..((((((.......)))).))..)).)))).......... ( -29.10)
>DroYak_CAF1 22834 91 + 1
GGUCAAAAGCUGAGUUCGCUCAGCUGGCUAAGCUGCCCCGGCUCGGCCGCAUGUUGCCCCUGCUAAGCACACUCGCAGGAUAAUCCUAAUU
((.(((.(((((((....)))))))(((..(((((...)))))..))).....)))))(((((...........)))))............ ( -33.80)
>DroAna_CAF1 25729 91 + 1
GGUCAAAAGCUGAGUUCUCUCAGCUGGCUAAGCUGCUACAAUCCGGUCGCGUGUUGCUCCUGCUAAGCACACUCACAGGAUAAUCCUAAUU
((.....(((((((....)))))))(((......)))...((((.((.(.((((.(((.......))))))).))).))))...))..... ( -25.30)
>consensus
GGUCAAAAGCUGAGCUCGCUCAGCUGGCUAAGCUGCCCCGGCUAGUCCGCAUGUUGCUCCUGCUAAGCACACUCGCAGGAUAAUCCUAAUU
((((...(((((((....)))))))(((......)))..)))).(((((((.((((((.......)))).)).))).)))).......... (-24.77 = -25.08 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:52 2006