Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,670,900 – 7,670,998 |
Length | 98 |
Max. P | 0.555131 |
Location | 7,670,900 – 7,670,998 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 90.14 |
Mean single sequence MFE | -30.37 |
Consensus MFE | -25.52 |
Energy contribution | -26.30 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.19 |
Mean z-score | -1.65 |
Structure conservation index | 0.84 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.555131 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7670900 98 + 22407834 AUUUAGGGUCUGCCAAUGCAAAGCGGAAAUAUGAUUUGUGUUUCAGUUUCGAGUACCGGAAGCGGAAGUUGUUGCUCGCAUGUCGAACGGAUCAACAC ......((((((...((((.((((.(((((((.....))))))).)))).(((((.....(((....)))..)))))))))......))))))..... ( -26.30) >DroSec_CAF1 16013 98 + 1 AUUUAGGGUCUGCCAAUGCAAAGCGGAAAUAUGAUUUGUGUUUCAGUUUCGAGCAGCGGAAGCGGAAGUUGUUGUUCGCAUGUCGAACGGAUCAACAC ......((((((...((((.((((.(((((((.....))))))).)))).((((((((...((....))))))))))))))......))))))..... ( -29.60) >DroSim_CAF1 16134 98 + 1 AUUUAGGGUCUGCCAAUGCAAAGCGGAAAUAUGAUUUGUGUUUCAGUUUCGAGCAGCGGAAGCGGAAGUUGUUGCUCGCAUGUCGAACGGAUCAACAC ......((((((...((((.((((.(((((((.....))))))).)))).((((((((...((....))))))))))))))......))))))..... ( -32.00) >DroEre_CAF1 24355 98 + 1 AUUUAGGGUCUGCCAAUGCAAAGCGGAAAUAUGAUUUGUGUUUCAGUUUCGAGCAGCGGAAGCGGAAGUUGUUGCUCGCAUGUCGAACGGAUCAACAC ......((((((...((((.((((.(((((((.....))))))).)))).((((((((...((....))))))))))))))......))))))..... ( -32.00) >DroYak_CAF1 16839 98 + 1 AUUUGGGGCCUGCCAAUGCAAAGCGGAAAUAUGAUUUGUGUUUCAGCUUCGAGCAGCGGAAACGGAAGUUGUUGCUCGCAUGUCGAAUGGAUCAACAC ((((((((....)).((((.((((.(((((((.....))))))).)))).((((((((...((....)))))))))))))).)))))).......... ( -31.70) >DroAna_CAF1 19604 95 + 1 GUUGCGCCUCUGCCAAUUCGGAGCGGAAAUAUGAUUUGUGUUUCAGCAUUGAGUACCGGAAACGGAAGU---UGCUCGCAUGUCGGAGCGAAACACAC .((.(((.((((......))))))).))........((((((((...........(((....)))....---.((((........)))))))))))). ( -30.60) >consensus AUUUAGGGUCUGCCAAUGCAAAGCGGAAAUAUGAUUUGUGUUUCAGUUUCGAGCAGCGGAAGCGGAAGUUGUUGCUCGCAUGUCGAACGGAUCAACAC ......((((((...((((.((((.(((((((.....))))))).)))).((((((((...((....))))))))))))))......))))))..... (-25.52 = -26.30 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:51 2006