| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,668,139 – 7,668,241 |
| Length | 102 |
| Max. P | 0.984045 |
| Location | 7,668,139 – 7,668,241 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 83.93 |
| Mean single sequence MFE | -26.06 |
| Consensus MFE | -18.86 |
| Energy contribution | -19.62 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.83 |
| Structure conservation index | 0.72 |
| SVM decision value | 1.96 |
| SVM RNA-class probability | 0.984045 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7668139 102 + 22407834 AAAUGGGCUCAAAUCAACGUCUGAGCUGGCUUAAAACAGCACUUAGAUCUGACGACUGGCAAAGAAAAUUAAGGGCUUUU-AGACUACAAGCCUAUUAUUUAU .((((((((.........((((((((((........)))).(((((.(((............)))...))))).....))-))))....))))))))...... ( -21.42) >DroSec_CAF1 13255 102 + 1 AAAUGGGCUCAAAUCAACGUCUGAGCUGGCUUAAAACAGCAGUCAGAUCUGACGUCUGGCAAAGGAAAUCAAGGGUUUUU-AUAACACAAGCCUAUUAAAUAU .((((((((....((((((((.((.((((((.........)))))).)).))))).)))....((((((.....))))))-........))))))))...... ( -26.40) >DroSim_CAF1 13355 99 + 1 A-AUGGGCUCAAAUCAACGUCUGAACUGGCUUAAAACAGCAGUCAGAUCUGACGU--AGCAAAGGAAAUCAAGGGUUUUU-GAACACCAAGCCUAUUAAAUAU (-(((((((.......(((((.((.((((((.........)))))).)).)))))--......((...(((((....)))-))...)).))))))))...... ( -26.90) >DroEre_CAF1 21629 101 + 1 AAAUGGGCUCAAAUCAACGUCUGAGCUGGCUUAAACCAGCAAUCAGAUCUGACGCUUGCCAAAGAAAACCAACGAAAAUCCAA--CACAAGCCUAUUAAAUAU .((((((((....(((..(((((((((((......)))))..)))))).)))..(((....)))...................--....))))))))...... ( -24.60) >DroYak_CAF1 13954 103 + 1 AAAUGGGCUCAAAUCAACGUCUGAACUGGCUUACAGCAGCAGUCAGAUCUGACGUCUGCCAACGGAAAUCAGCGAUUUUUUAAACCACGAGCCUAUUAAAUAU .(((((((((........((((((.(((((.....))..)))))))))((((..((((....))))..))))................)))))))))...... ( -31.00) >consensus AAAUGGGCUCAAAUCAACGUCUGAGCUGGCUUAAAACAGCAGUCAGAUCUGACGUCUGGCAAAGGAAAUCAAGGGUUUUU_AAACCACAAGCCUAUUAAAUAU .((((((((........((((.((.((((((.........)))))).)).)))).........(((((((...))))))).........))))))))...... (-18.86 = -19.62 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:50 2006