Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 789,034 – 789,135 |
Length | 101 |
Max. P | 0.542562 |
Location | 789,034 – 789,135 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 91.72 |
Mean single sequence MFE | -29.10 |
Consensus MFE | -21.91 |
Energy contribution | -21.91 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.09 |
Mean z-score | -1.63 |
Structure conservation index | 0.75 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.542562 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 789034 101 + 22407834 UAGGCGGUGUGACCCAAAAACAUAGCAUAGAUAAAGCCGUAGCCGAAAGGCAAAUCCAAAUCCGUGGCGCCACCCCAGCAAUUGGACCUAGUCAUGGAGUU- ..(((.((((.........))))............)))...(((....))).........((((((((.....((.(....).)).....))))))))...- ( -26.22) >DroSec_CAF1 48826 99 + 1 UAGGCGGUGUGACCCAAAAAC--GGCAUAGAUAAAGCCGUAGCCAAAAGGCAAAUCCAAAUCCGUGGCGCCUCCUCAGAAAUGGGAGCUAGUCAUGGAGUU- ..(((((......))....((--(((.........))))).)))....((.....))...((((((((..((((.((....))))))...))))))))...- ( -34.70) >DroSim_CAF1 53267 99 + 1 UAGGCGGUGUGACCCAAAAAC--GGCAUAGAUAAAGCCGUAGCCAAAAGGCAAAUCCAAAUCCGUGGCGCCUCCUCAGAAAUGGGAGCUAGUCAUGGAGUU- ..(((((......))....((--(((.........))))).)))....((.....))...((((((((..((((.((....))))))...))))))))...- ( -34.70) >DroEre_CAF1 50302 97 + 1 UUGGCGGUGUGACCCAAAAAU--GGCAUAGAUAAAGCCGUACCCAAAAGGCAAAUCCAAAUCCAUGGC-CCUCCCCAGAAAUCGGACCUAGUCAUGGAGU-- ((((...(((.........((--(((.........))))).........)))...)))).((((((((-....((.(....).)).....))))))))..-- ( -22.07) >DroYak_CAF1 52574 100 + 1 UCGGCGGUGUGACCCAAAAAC--GGCAUAGAUAAGGCCGUAGCCAAAAGGCAAAUCCAAAUCCGUGGCGCCUCCCCAGAAAUUGGCCCUAGUCAUGGAGUUU ..((.(((((.((......((--(((.........))))).(((....)))............)).))))).))(((.....((((....)))))))..... ( -27.80) >consensus UAGGCGGUGUGACCCAAAAAC__GGCAUAGAUAAAGCCGUAGCCAAAAGGCAAAUCCAAAUCCGUGGCGCCUCCCCAGAAAUGGGACCUAGUCAUGGAGUU_ ...((((((((.((.........))))).......))))).(((....))).........((((((((.....((........)).....)))))))).... (-21.91 = -21.91 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:46 2006