Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,665,386 – 7,665,493 |
Length | 107 |
Max. P | 0.910972 |
Location | 7,665,386 – 7,665,493 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 81.70 |
Mean single sequence MFE | -35.23 |
Consensus MFE | -14.24 |
Energy contribution | -16.18 |
Covariance contribution | 1.95 |
Combinations/Pair | 1.16 |
Mean z-score | -4.11 |
Structure conservation index | 0.40 |
SVM decision value | 1.07 |
SVM RNA-class probability | 0.910972 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7665386 107 + 22407834 AUUAGAAGGUCAUUG-GCGA-ACAGCAAGAGCU------GUUCGUUAAUAAUAUUAAUUAAGCCAUUACGCUCAACUUCCAUUUGGGUUGGUUGAGUGUCAAUGGAAUGGCAUUA ........(((((((-((((-(((((....)))------)))))))))).............((((((((((((((((((....)))..)))))))))).)))))...))).... ( -42.00) >DroSec_CAF1 10572 107 + 1 AUUAGAAGGUCAUUG-GCGA-ACAGCAAGUGCU------GUUCGUUAAUAAUAUUAAUUAAGCCAUUACGCUCAACUUCCAUUUGGGUUGGUUGAGUGUCAAUGGAAUGGCAUUA ........(((((((-((((-(((((....)))------)))))))))).............((((((((((((((((((....)))..)))))))))).)))))...))).... ( -42.30) >DroEre_CAF1 18780 113 + 1 AUUAGAAGGUCAUUG-GCGA-ACAGCAAGAGCUGUUGCUGUUCGUUAAUAAUAUUAAUUAAGCCAUUACGCUCUACUUCCAUUUGGGUUGGUUGAGUGUCAAUGGAAUGGAAUUA ...........((((-((((-(((((((......))))))))))))))).....(((((...(((((((((((.((((((....)))..))).)))))).))))).....))))) ( -37.80) >DroYak_CAF1 10832 107 + 1 AUUAGAAGGUCAUUG-GCGA-ACAGCAAGAGCU------GUUCGGUAAUAAUAUUAAUUAAGCCAUUACGCUUCACUUCCAUUUGGGUUCGUUGAGUGUCAAUGGAAUGGCAUUA ........((((((.-.(((-(((((....)))------)))))..................(((((((((((.((.(((....)))...)).)))))).))))))))))).... ( -33.20) >DroAna_CAF1 14066 108 + 1 AUUAGAAGGUCAUUGGGCGA-ACAGCUAGAACG------CUCGGUUAAUAAUAUUAAUUAAGCCAUUACGUUCUAGUUCCAUUUUGUUGGCCUAAGUGUCAAUGGAAAGGCAUUA .............(((((.(-((((((((((((------((..((((((...))))))..)))......)))))))).......)))).)))))((((((........)))))). ( -29.91) >DroPer_CAF1 11527 88 + 1 AUUAGUAGGCCAUUG-GCGAAACAGCCAAAGCG------UUUGGUUAAUAACAUUAAUUAAGCCAUUUCG--------------------AGUGGCUGUCAAUGGAAAGGCAUUA ....((...((((((-((.....((((((....------.))))))..............((((((....--------------------.))))))))))))))....)).... ( -26.20) >consensus AUUAGAAGGUCAUUG_GCGA_ACAGCAAGAGCU______GUUCGUUAAUAAUAUUAAUUAAGCCAUUACGCUCAACUUCCAUUUGGGUUGGUUGAGUGUCAAUGGAAUGGCAUUA ........((((((..((......))....................................(((((((((((.((((((....)))..))).)))))).))))))))))).... (-14.24 = -16.18 + 1.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:49 2006