Locus 2728

Sequence ID 2L_DroMel_CAF1
Location 7,664,861 – 7,664,953
Length 92
Max. P 0.752203
window4341

overview

Window 1

Location 7,664,861 – 7,664,953
Length 92
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 89.03
Mean single sequence MFE -34.22
Consensus MFE -28.47
Energy contribution -29.00
Covariance contribution 0.53
Combinations/Pair 1.03
Mean z-score -2.06
Structure conservation index 0.83
SVM decision value 0.48
SVM RNA-class probability 0.752203
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7664861 92 + 22407834
------------C---UGGGUCCUGGGGCAGCUGUCAUGUUGAGCUAGUCAACGUGAUUUGUCUCGACGCCAGUCAAAUCAAGUUUUUCCUAGAAGUCGUGCCCUUU
------------.---.(((..(.(((((((..((((((((((.....)))))))))))))))))(((....))).......................)..)))... ( -28.90)
>DroSec_CAF1 10046 92 + 1
------------C---UGGGUCCUGGGGCAGCUGUCAUGUUGAGCCAGUCAACGUGAUUUGUCUCGACGCCAGUCAAAUCAAGUUUUUCCUAGGAGUCGUGCCCUUU
------------.---.(((..(.(((((((..((((((((((.....)))))))))))))))))(((.((((..(((......)))..)).)).))))..)))... ( -32.70)
>DroSim_CAF1 10174 92 + 1
------------C---UGGGUCCUGGGGCAGCUGUCAUGUUGAGCCAGUCAACGUGAUUUGUCUCGACGCCAGUCAAAUCAAGUUUUUCCUAGGAGUCGUGCCCUUU
------------.---.(((..(.(((((((..((((((((((.....)))))))))))))))))(((.((((..(((......)))..)).)).))))..)))... ( -32.70)
>DroEre_CAF1 18264 98 + 1
CUGGG-----UUC---UGGGUCCUGGGGCA-CUGUCAUGUUGAGCCAGUCAGCGUGAUUUGUCUCGACGCCAGUCAAAUCAAGUUUUUCCUAGGAGUCGUGCCCUUU
..(((-----(..---(((.((((((((((-..((((((((((.....)))))))))).)))...(((....))).............))))))).))).))))... ( -37.30)
>DroYak_CAF1 10341 99 + 1
CUGGG-----AAC---UGGAUCCUGGGGCAGCUGUCAUGUUGAGCCAGUCAACGUGAUUUGUCUCGACGCCAGUCAAAUCAAGUUUUUCCUAGGAGUCCUGCCCUUU
..(((-----...---.(((((((((((.((((((((((((((.....)))))))))).......(((....)))......))))..)))))))).)))..)))... ( -36.60)
>DroAna_CAF1 13490 107 + 1
UUGGGGUUAGAGCAGGAAGGUCCUGGGGCAGCUGUCAUGUUGAGCCAGUCAACGUGAUUUGUCUCGACGCCAGUCAAAUCAACAUUUUCCUAGGAGUCGAGCCCUUU
..((((((....((((.....))))((((((..((((((((((.....))))))))))))))))((((.((((..((((....))))..)).)).)))))))))).. ( -37.10)
>consensus
____________C___UGGGUCCUGGGGCAGCUGUCAUGUUGAGCCAGUCAACGUGAUUUGUCUCGACGCCAGUCAAAUCAAGUUUUUCCUAGGAGUCGUGCCCUUU
.................(((..(.((((((...((((((((((.....)))))))))).))))))(((.((((..(((......)))..)).)).))))..)))... (-28.47 = -29.00 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:48 2006