Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,662,347 – 7,662,446 |
Length | 99 |
Max. P | 0.990412 |
Location | 7,662,347 – 7,662,446 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 81.71 |
Mean single sequence MFE | -24.32 |
Consensus MFE | -12.11 |
Energy contribution | -11.95 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.17 |
Mean z-score | -3.48 |
Structure conservation index | 0.50 |
SVM decision value | 2.21 |
SVM RNA-class probability | 0.990412 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7662347 99 - 22407834 UGUGACUUUCAAUCUUCG-UUUGCCCAAGCACUAUUGAAAGGUCU------AUAGAAUUAAGUCACCUUUGAUUUAAACUCGUGAUCAUUAAUCACUUAAAUCAAA .(((((((.........(-(((....)))).((((.((....)).------))))....)))))))..(((((((((....(((((.....)))))))))))))). ( -20.90) >DroSec_CAF1 7414 99 - 1 CGUGACUUUCAAUCUUCG-CUUGCCCAAGCACUAUUGAAAGGUCU------AUGGAAAUAAGUCACAUUUGAUUUAAACUCAUGGCCAUUAAUCACUUAAAUCAUA .((((.(((((((....(-(((....))))...)))))))((.((------((((...(((((((....)))))))...)))))))).....)))).......... ( -23.70) >DroSim_CAF1 7383 99 - 1 UGUGACUUUCAAUCUUCG-CUUGCCCAAGCACUAUUGAAAGGUCU------AUGGAAAUAAGUCACAUUUGAUUUAAUCUCAUGGUCAUUAAUCACUUAAAUCAUA .((((((((((((....(-(((....))))...))))))))(.((------(((..(.(((((((....))))))).)..))))).).....)))).......... ( -25.80) >DroEre_CAF1 15837 99 - 1 UGUGACUUUCAAUCUACCUUUUUCCCAAGCACU-------GGUCUUGUGUACCAGAAACAAGUCACAUUUGAUUUGAGACCAUGAUCAUUUAUCGCUUAAAUCAAA ((((((((.........(((......)))..((-------((((....).)))))....))))))))(((((((((((.(.((((....)))).)))))))))))) ( -24.90) >DroYak_CAF1 7806 106 - 1 UGUGACUUUCCAUCUACGAUUUACGCAAGCACUAUUGAAAGGUCUUGUGUUAUGGAAAUAUGUCACAUUUGAUUUAAACUCAUGAUCAUUUAUCACUUAAAUCGAA (((((((((((((.........(((((((.(((.......)))))))))).)))))))...))))))((((((((((....((((....))))...)))))))))) ( -26.30) >consensus UGUGACUUUCAAUCUUCG_UUUGCCCAAGCACUAUUGAAAGGUCU______AUGGAAAUAAGUCACAUUUGAUUUAAACUCAUGAUCAUUAAUCACUUAAAUCAAA .(((((((....(((............((.(((.......)))))........)))...))))))).((((((((((.....((((.....)))).)))))))))) (-12.11 = -11.95 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:47 2006