Locus 2724

Sequence ID 2L_DroMel_CAF1
Location 7,652,232 – 7,652,329
Length 97
Max. P 0.700794
window4337

overview

Window 7

Location 7,652,232 – 7,652,329
Length 97
Sequences 3
Columns 97
Reading direction reverse
Mean pairwise identity 94.85
Mean single sequence MFE -24.30
Consensus MFE -19.56
Energy contribution -20.57
Covariance contribution 1.00
Combinations/Pair 1.06
Mean z-score -2.61
Structure conservation index 0.81
SVM decision value 0.35
SVM RNA-class probability 0.700794
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7652232 97 - 22407834
UUUUGUAAGAGAUAGAUCCCGGAUAAGGAUGUGUGGUCUGUUGAAUGAAAAGUCAGUGAGGUUCUUAAUAUUUUAUAGAGACAAAGAGACCAUAAAA
.(((((.....(((.((((.......)))).)))(((((.((...(....)(((.(((((((.......)))))))...))).)).)))))))))). ( -16.90)
>DroSec_CAF1 1278 97 - 1
UUUUGUACGGGAUAGAUACCGUAUAAGGAUGUGUGGUCUGUUGAAUGUAAAGCCAGUGAGGUUCUUAAUAUUUUAUAGAGACAAAGAGACCAUAAAA
((((((((((........))))))))))...((((((((.((...(((((((....((((...))))...)))))))......)).))))))))... ( -25.70)
>DroSim_CAF1 1286 97 - 1
UUUUGUAUGGGAUAGAUCCCGUAUAAGGAUGUGUGGUCUGUUGAAUGAAAAGCCAGUGAGGUUCUUCAUAUUUUAUAGAGACAAAGAGACCAUAAAA
((((((((((((....))))))))))))...((((((((.(((.(((((.((((.....)))).))))).(((....))).)))..))))))))... ( -30.30)
>consensus
UUUUGUAAGGGAUAGAUCCCGUAUAAGGAUGUGUGGUCUGUUGAAUGAAAAGCCAGUGAGGUUCUUAAUAUUUUAUAGAGACAAAGAGACCAUAAAA
((((((((((((....))))))))))))...((((((((.(((........(((.....)))((((.(((...))).)))))))..))))))))... (-19.56 = -20.57 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:44 2006