Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,647,340 – 7,647,454 |
Length | 114 |
Max. P | 0.970294 |
Location | 7,647,340 – 7,647,454 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.78 |
Mean single sequence MFE | -18.60 |
Consensus MFE | -15.31 |
Energy contribution | -15.81 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.58 |
Structure conservation index | 0.82 |
SVM decision value | 1.66 |
SVM RNA-class probability | 0.970294 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7647340 114 - 22407834 CUACACCAA---ACCCAUCAUCUA---UUACACACAUACCGAUCCGCUCUUGAAUGUCUCUCAACGUUCAUUUUUGUUUAUAUUACCUAUGUGUGUGUUUUGUUUUUGAUUUACAAACUC ......(((---(..((.......---.((((((((((..((.....)).(((((((......))))))).................))))))))))...))..))))............ ( -17.60) >DroPse_CAF1 187780 120 - 1 UUCCACCAAACAACCCAUCAUCUGAUACUCCACACAUACCGAUCCGCUCUUGAAUGUCUAUCAACGUUCAUUUUCGUUUAUCUAACAUAUGUGUGUGUUUUGUUUUUGAUUUACAAACUU .......((((((..((((....)))....((((((((............(((((((......))))))).....(((.....))).)))))))).)..))))))............... ( -19.10) >DroAna_CAF1 158865 114 - 1 CUACACCAA---ACCCAUCAUCUU---CUACACACAUACAGAUCCGCUCUUGAAUGUCUAUCAACGUUCAUUUUUGUUUACAUUACCUAUGUGUGUGUUUUGUUUUUGAUUUACAAACUC .........---....((((....---(.(((((((((.((.........(((((((......)))))))....((....))....)).)))))))))...)....)))).......... ( -18.60) >DroPer_CAF1 184646 120 - 1 UUCCACCAAACAACCCAUCAUCUGAUACUCCACACAUACCGAUCCGCUCUUGAAUGUCUAUCAACGUUCAUUUUCGUUUAUCUAACAUAUGUGUGUGUUUUGUUUUUGAUUUACAAACUU .......((((((..((((....)))....((((((((............(((((((......))))))).....(((.....))).)))))))).)..))))))............... ( -19.10) >consensus CUACACCAA___ACCCAUCAUCUG___CUACACACAUACCGAUCCGCUCUUGAAUGUCUAUCAACGUUCAUUUUCGUUUAUAUAACAUAUGUGUGUGUUUUGUUUUUGAUUUACAAACUC ................((((.........(((((((((..((.....)).(((((((......)))))))...................)))))))))........)))).......... (-15.31 = -15.81 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:42 2006