Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,637,302 – 7,637,416 |
Length | 114 |
Max. P | 0.859168 |
Location | 7,637,302 – 7,637,416 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.34 |
Mean single sequence MFE | -28.57 |
Consensus MFE | -23.51 |
Energy contribution | -25.32 |
Covariance contribution | 1.81 |
Combinations/Pair | 1.08 |
Mean z-score | -1.93 |
Structure conservation index | 0.82 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.859168 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7637302 114 + 22407834 UUUUUGUGACAUUUUCCGUAUUAAAAACGUUUUAAAAAACAACAAACAUGCAGAUUUAGAUGCCGAGGGUUGAUUU-CC-----GGGCAACAGCAUCCGUGUUAAAAUCUCUGCUCAGAA ((((((.(((.((((........)))).))).))))))...........(((((....(.((((..(((......)-))-----.)))).)((((....))))......)))))...... ( -19.70) >DroPse_CAF1 170162 120 + 1 UUUUUGUGACGUUUUUCGUAUUAAAAACGUUUUAAAAAACAACAAACAUGCAGAUUUAGAUGCCGAGGGUUGAUGGUCCACGAGGACCGACAGCAUCCGCGUUAAAAUCUCUGCUCAAAA ((((((.(((((((((......))))))))).))))))...........((((((((.(((((.((..((((.((((((....)))))).)))).)).))))).)))..)))))...... ( -37.90) >DroAna_CAF1 142848 114 + 1 UUUUUGUGACAUUUUUCGUAUUAAAAACGUUUUAAAAAAUAACAAACAUGCAGAUUUAGAUGCCAAGGGAUGAUUU-CC-----GGCCAACAGCAUCCGCGUUAAAAUCUCCGCUCAGAA ((((((.(((.(((((......))))).))).))))))...........((((((((.(((((...((((....))-))-----.((.....))....))))).))))))..))...... ( -18.80) >DroPer_CAF1 166044 120 + 1 UUUUUGUGACGUUUUUCGUAUUAAAAACGUUUUAAAAAACAACAAACAUGCAGAUUUAGAUGCCGAGGGUUGAUGGUCCACGAGGACCGACAGCAUCCGCGUUAAAAUCUCUGCUCAAAA ((((((.(((((((((......))))))))).))))))...........((((((((.(((((.((..((((.((((((....)))))).)))).)).))))).)))..)))))...... ( -37.90) >consensus UUUUUGUGACAUUUUUCGUAUUAAAAACGUUUUAAAAAACAACAAACAUGCAGAUUUAGAUGCCGAGGGUUGAUGG_CC_____GACCAACAGCAUCCGCGUUAAAAUCUCUGCUCAAAA ((((((.(((((((((......))))))))).))))))...........((((((((.(((((.((..((((.(((((......))))).)))).)).))))).))))))..))...... (-23.51 = -25.32 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:36 2006