Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,626,623 – 7,626,728 |
Length | 105 |
Max. P | 0.974004 |
Location | 7,626,623 – 7,626,728 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 94.17 |
Mean single sequence MFE | -30.35 |
Consensus MFE | -26.98 |
Energy contribution | -27.23 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -2.41 |
Structure conservation index | 0.89 |
SVM decision value | 1.58 |
SVM RNA-class probability | 0.965170 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7626623 105 + 22407834 UGGGCGCCUGGGAGCAGCAGCUUACUGACUAGACAGCUUCGAGUCCAAAAAGCGAUUUUAAUUCAACACAAACAAACAAGCAUCAAUAGCAGAGCCCAGGCAGCC--- ..((((((((((..(.((.((((...((((.((.....)).))))....))))((.......))........................)).)..))))))).)))--- ( -30.80) >DroSec_CAF1 126373 98 + 1 UGGGCGCCUGGGAGC---AGCUUACUGACUAGACAGCUUCGAGUCCAAAAAGCGAUUUUAAUUCAACACAA----ACAAGCAUCAAUAGCAGAGCCCAGGCAGCC--- ..((((((((((..(---.((((...((((.((.....)).))))....))))..................----....((.......)).)..))))))).)))--- ( -29.80) >DroSim_CAF1 132279 98 + 1 UGGGCGCCUGGGAGC---AGCUUACUGACUAGACAGCUUCGAGUCCAAAAAGCGAUUUUAAUUCAACACAA----ACAAGCAUCAAUAGCAGAGCCCAGGCAGCC--- ..((((((((((..(---.((((...((((.((.....)).))))....))))..................----....((.......)).)..))))))).)))--- ( -29.80) >DroYak_CAF1 129699 101 + 1 UGGGCGCCUGGGAGC---AGCUUACUGACUAGACAGCUUCGAGUCCAAAAAGCGAUUUUAAUUCAACACAA----ACAGGCAUCAAUAGCAGAGCCCAGGCAACCCAG ((((.(((((((..(---.((((...((((.((.....)).))))....))))..................----....((.......)).)..)))))))..)))). ( -31.00) >consensus UGGGCGCCUGGGAGC___AGCUUACUGACUAGACAGCUUCGAGUCCAAAAAGCGAUUUUAAUUCAACACAA____ACAAGCAUCAAUAGCAGAGCCCAGGCAGCC___ ..((((((((((..(....((((...((((.((.....)).))))....))))..........................((.......)).)..))))))).)))... (-26.98 = -27.23 + 0.25)
Location | 7,626,623 – 7,626,728 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 94.17 |
Mean single sequence MFE | -35.35 |
Consensus MFE | -32.01 |
Energy contribution | -31.82 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.04 |
Mean z-score | -2.41 |
Structure conservation index | 0.91 |
SVM decision value | 1.72 |
SVM RNA-class probability | 0.974004 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7626623 105 - 22407834 ---GGCUGCCUGGGCUCUGCUAUUGAUGCUUGUUUGUUUGUGUUGAAUUAAAAUCGCUUUUUGGACUCGAAGCUGUCUAGUCAGUAAGCUGCUGCUCCCAGGCGCCCA ---(((.(((((((..(.((..(..((((..........))))..).........((((....((((.((.....)).))))...)))).)).)..)))))))))).. ( -33.70) >DroSec_CAF1 126373 98 - 1 ---GGCUGCCUGGGCUCUGCUAUUGAUGCUUGU----UUGUGUUGAAUUAAAAUCGCUUUUUGGACUCGAAGCUGUCUAGUCAGUAAGCU---GCUCCCAGGCGCCCA ---(((.(((((((..(.(((.(..((((....----..))))..).........(((..((((((........))))))..))).))).---)..)))))))))).. ( -35.30) >DroSim_CAF1 132279 98 - 1 ---GGCUGCCUGGGCUCUGCUAUUGAUGCUUGU----UUGUGUUGAAUUAAAAUCGCUUUUUGGACUCGAAGCUGUCUAGUCAGUAAGCU---GCUCCCAGGCGCCCA ---(((.(((((((..(.(((.(..((((....----..))))..).........(((..((((((........))))))..))).))).---)..)))))))))).. ( -35.30) >DroYak_CAF1 129699 101 - 1 CUGGGUUGCCUGGGCUCUGCUAUUGAUGCCUGU----UUGUGUUGAAUUAAAAUCGCUUUUUGGACUCGAAGCUGUCUAGUCAGUAAGCU---GCUCCCAGGCGCCCA ..((((.(((((((..(.(((((((((((...(----(((........))))...))....(((((........))))))))))).))).---)..))))))))))). ( -37.10) >consensus ___GGCUGCCUGGGCUCUGCUAUUGAUGCUUGU____UUGUGUUGAAUUAAAAUCGCUUUUUGGACUCGAAGCUGUCUAGUCAGUAAGCU___GCUCCCAGGCGCCCA ...(((.(((((((....((..(..((((..........))))..).........((((....((((.((.....)).))))...))))....)).)))))))))).. (-32.01 = -31.82 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:32 2006