Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,626,463 – 7,626,555 |
Length | 92 |
Max. P | 0.634087 |
Location | 7,626,463 – 7,626,555 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.96 |
Mean single sequence MFE | -12.97 |
Consensus MFE | -11.74 |
Energy contribution | -11.77 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.04 |
Mean z-score | -1.34 |
Structure conservation index | 0.91 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.634087 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7626463 92 + 22407834 AUCUAUGAAAAUAUUCAUGGCAAGUUGCAUAAAUAAUCCGCCUAGCACUUCAAAUUGAUAAAGACAAUUUACAAUUUAUACAAUGCAC--ACAG-------------------------- ..(((((((....)))))))...(((((((.........((...)).....((((((.((((.....)))))))))).....))))).--))..-------------------------- ( -13.70) >DroSec_CAF1 126219 92 + 1 AUCUAUGAAAAUAUUCAUGGCAAGUUGCAUAAAUAAUCCGCCUAGCACUUCAAAUUGAUAAAGACAAUUUACAAUUUAUACAAUGCAC--ACAG-------------------------- ..(((((((....)))))))...(((((((.........((...)).....((((((.((((.....)))))))))).....))))).--))..-------------------------- ( -13.70) >DroSim_CAF1 132125 92 + 1 AUCUAUGAAAAUAUUCAUGGCAAGUUGCAUAAAUAAUCCGCCUAGCACUUCAAAUUGAUAAAGACAAUUUACAAUUUAUACAAUGCAC--ACAG-------------------------- ..(((((((....)))))))...(((((((.........((...)).....((((((.((((.....)))))))))).....))))).--))..-------------------------- ( -13.70) >DroYak_CAF1 129541 94 + 1 AUCUAUGAAAAUAUUCAUGGCAAGCUGCAUAAAUAAUCCGCCUAGCACUUCAAAUUGAUAAAGACAAUUUACAAUUUAUACAAUGCACACACAG-------------------------- ..(((((((....)))))))...(.(((((.........((...)).....((((((.((((.....)))))))))).....))))))......-------------------------- ( -12.80) >DroAna_CAF1 123038 90 + 1 AUCUAUGAAAAUAUUCAUGGCAAGUUGCAUAAAUAAUCCGCCUAGCACUUCAAAUUGAUAAAGACAAUUUACAGUUUAUACAAUGCAC----AA-------------------------- ..(((((((....)))))))...((.((((.........((...)).....((((((.((((.....)))))))))).....))))))----..-------------------------- ( -12.80) >DroPer_CAF1 156506 118 + 1 AUCUAUGAAAAUAUUCAUGGCAAGUUGCAUAAAUAAUCCGCCCAGCACUUCAAAUUGAUAAAGACAAUUUACAAUUUAUACAAUACAC--AGACGUUGUCCCCCCUCCCUCUCCCCCCCU ..(((((((....)))))))...((((.((((((.....((...)).....((((((.......))))))...)))))).))))....--.............................. ( -11.10) >consensus AUCUAUGAAAAUAUUCAUGGCAAGUUGCAUAAAUAAUCCGCCUAGCACUUCAAAUUGAUAAAGACAAUUUACAAUUUAUACAAUGCAC__ACAG__________________________ ..(((((((....))))))).....(((((.........((...)).....((((((.((((.....)))))))))).....)))))................................. (-11.74 = -11.77 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:30 2006