Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,624,425 – 7,624,543 |
Length | 118 |
Max. P | 0.893054 |
Location | 7,624,425 – 7,624,543 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 86.66 |
Mean single sequence MFE | -41.68 |
Consensus MFE | -30.72 |
Energy contribution | -30.08 |
Covariance contribution | -0.64 |
Combinations/Pair | 1.24 |
Mean z-score | -2.23 |
Structure conservation index | 0.74 |
SVM decision value | 0.97 |
SVM RNA-class probability | 0.893054 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7624425 118 + 22407834 GCAACAACAUUUUGUCCUUGUGUAGAAAGGAUGAUA-UCCCGUCGAACCAGCUGGUAGGCGGUACGCUGCCACGCUUCGUCAGCGGACAGCGGAGCGUGCCGAAUACCAUUUGAUGGAU ...........(..(((((.......)))))..)..-..((((((((.....(((((..(((((((((.((.(..((((....))))..).)))))))))))..))))))))))))).. ( -46.60) >DroSec_CAF1 124182 118 + 1 CCAACAACUUUUUGUCCUUGUGUAGAAAGGAUGAUA-UCCAGUCGAACCAGCUGGUAGGCGGUACUCUGCUACGCUUCGUCAGCGGACAGCGGAGCGUGCCGAAUACCAUUUGAUGGAU ...........(..(((((.......)))))..).(-((((.(((((.....(((((..((((((((((((.((((.....))))...))))))..))))))..))))))))))))))) ( -42.90) >DroSim_CAF1 130084 118 + 1 GCAACAACUUUUUGUCCUUGUGUAGAAAGGAUGAUA-UCCAGUCGAACCAGCUGGUAGGCGGUACUCUGCCACGCUUCGUCAGCGGACAGCGGAGCGUGCCGAAUACCAUUUGAUGGAU ...........(..(((((.......)))))..).(-((((.(((((.....(((((..(((((((((((..((((.....))))....)))))..))))))..))))))))))))))) ( -41.20) >DroYak_CAF1 127341 118 + 1 GUAUCAUCCUUUUGUCCUUGUGUAGAAAGGAUGAUA-UCCGGUCGAACCAGCUGGUAGGCGGUACUCUGCCACGCUUCGUCAGCGGAAAGCGGAGCGUGCCGAAUUUGAUUUGAUGGAU .((((((((((((...(....)..))))))))))))-((((.(((((.(((.((((.(((((....)))))(((((((((.........)))))))))))))...))).))))))))). ( -45.40) >DroAna_CAF1 121017 119 + 1 AACUCACUUUUUUUUCUUUGUGUAAAAAGGAUACUGCUCUAGUUGAACCAGCUGGUAGGCGUUCCUUUGACACGCUCCGUCAACAGAAAAUGUAGCAUGCCGAAUGCCAUUUGAUGGAU ...................((((..((((((...(((((((((((...)))))))..)))).)))))).))))..((((((((((.....))).((((.....))))....))))))). ( -32.30) >consensus GCAACAACUUUUUGUCCUUGUGUAGAAAGGAUGAUA_UCCAGUCGAACCAGCUGGUAGGCGGUACUCUGCCACGCUUCGUCAGCGGACAGCGGAGCGUGCCGAAUACCAUUUGAUGGAU ...........((((((((.......))))))))...(((.((((((((....))).((((((.....)))(((((((((.........)))))))))))).........)))))))). (-30.72 = -30.08 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:29 2006