Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,623,673 – 7,623,780 |
Length | 107 |
Max. P | 0.931762 |
Location | 7,623,673 – 7,623,780 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 88.41 |
Mean single sequence MFE | -29.98 |
Consensus MFE | -23.50 |
Energy contribution | -23.50 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.32 |
Structure conservation index | 0.78 |
SVM decision value | 1.22 |
SVM RNA-class probability | 0.931762 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7623673 107 + 22407834 GAUUUUGAAUAUACGUACAUACAUAUAGGUACGUAUGCACAUUUGGAAAUCUAGGCAAUGGCUUUGCUUGAUUUAUGUGCUUGUGCCCACGGGGUGUGUUCCCCAUU .........((((.((....)).))))((((((...((((((....(((((.((((((.....))))))))))))))))).))))))...((((......))))... ( -32.20) >DroSec_CAF1 123438 103 + 1 GAUUUUGAAUAUA----CAUACGUAUAUGUACCUAUGCACAUUUGGAAAUCUAGGCAAUGGCUUUGCUUGAUUUAUGGGCUUGUGCCCACGGGGUGUGUUCCCCAUU ((((((.((....----((((.(((....))).)))).....)).))))))(((((((.....))))))).....(((((....))))).((((......))))... ( -30.90) >DroSim_CAF1 129359 103 + 1 GAUUUUGAAUAUA----CAUACGUAUACGUACCUAUGCACAUUUGGAAAUCUAGGCAAUGGCUUUGCUUGAUUUAUGGGCUUGUGCCCACGGGGUGUGUUCCCCAUU ......(((((((----(.((((....))))(((............(((((.((((((.....))))))))))).(((((....))))).)))))))))))...... ( -31.40) >DroYak_CAF1 126608 90 + 1 GAUUUUCAAC-------------UA----UACGUAUGCACAUUUAGAAAUCUAGGCAAUGGCUUUGCUUGAUUUAUGUGCUUGUGCCCACGGGGUGUGUUCCCCAUU ..........-------------..----((((...((((((....(((((.((((((.....))))))))))))))))).)))).....((((......))))... ( -25.40) >consensus GAUUUUGAAUAUA____CAUACGUAUA_GUACCUAUGCACAUUUGGAAAUCUAGGCAAUGGCUUUGCUUGAUUUAUGGGCUUGUGCCCACGGGGUGUGUUCCCCAUU ....................................(((((.....(((((.((((((.....))))))))))).......)))))....((((......))))... (-23.50 = -23.50 + 0.00)
Location | 7,623,673 – 7,623,780 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 88.41 |
Mean single sequence MFE | -29.03 |
Consensus MFE | -19.40 |
Energy contribution | -19.40 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -3.69 |
Structure conservation index | 0.67 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.874647 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7623673 107 - 22407834 AAUGGGGAACACACCCCGUGGGCACAAGCACAUAAAUCAAGCAAAGCCAUUGCCUAGAUUUCCAAAUGUGCAUACGUACCUAUAUGUAUGUACGUAUAUUCAAAAUC .((((((......))))))((((....))....(((((..((((.....))))...)))))))..(((((((((((((....)))))))))))))............ ( -29.90) >DroSec_CAF1 123438 103 - 1 AAUGGGGAACACACCCCGUGGGCACAAGCCCAUAAAUCAAGCAAAGCCAUUGCCUAGAUUUCCAAAUGUGCAUAGGUACAUAUACGUAUG----UAUAUUCAAAAUC ...((((......))))((((((....)))))).......((((.....))))...(((((...((((((((((.(((....))).))))----))))))..))))) ( -32.50) >DroSim_CAF1 129359 103 - 1 AAUGGGGAACACACCCCGUGGGCACAAGCCCAUAAAUCAAGCAAAGCCAUUGCCUAGAUUUCCAAAUGUGCAUAGGUACGUAUACGUAUG----UAUAUUCAAAAUC ...((((......))))((((((....)))))).......((((.....))))...(((((...((((((((((.(((....))).))))----))))))..))))) ( -32.50) >DroYak_CAF1 126608 90 - 1 AAUGGGGAACACACCCCGUGGGCACAAGCACAUAAAUCAAGCAAAGCCAUUGCCUAGAUUUCUAAAUGUGCAUACGUA----UA-------------GUUGAAAAUC .((((((......))))))........(((((((((((..((((.....))))...)))))....)))))).......----..-------------.......... ( -21.20) >consensus AAUGGGGAACACACCCCGUGGGCACAAGCACAUAAAUCAAGCAAAGCCAUUGCCUAGAUUUCCAAAUGUGCAUACGUAC_UAUACGUAUG____UAUAUUCAAAAUC .((((((......))))))..(((((.......(((((..((((.....))))...))))).....))))).................................... (-19.40 = -19.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:28 2006