Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,622,999 – 7,623,090 |
Length | 91 |
Max. P | 0.850738 |
Location | 7,622,999 – 7,623,090 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.22 |
Mean single sequence MFE | -21.50 |
Consensus MFE | -12.51 |
Energy contribution | -13.82 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.18 |
Mean z-score | -1.87 |
Structure conservation index | 0.58 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.850738 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7622999 91 + 22407834 CUUUAUCGAUUGCAAUCAAC-----UUUC-CCUCGG-------CGAGC-----GGCUCUAUUAUCUCUGCGGUUG----------UU-UUAUCACCGCAUUGCAAUCUUUUGUGAAGCGA ((((((.(((((((((....-----...(-((((..-------.))).-----)).............(((((.(----------..-....)))))))))))))))....))))))... ( -21.90) >DroPse_CAF1 155405 113 + 1 CACUCCUGAUUGCAAUCAACGCAGUUUUC-CCCCUCCCUCUCUCUCUC-----UCCUUUAUUAUCUCUGCGGUUCUGCGGUGGGUUU-UUAUCUCGACAUUGCAAUCUUUUGUGCCGCAA (((....(((((((((...(((((....(-(.................-----.................))..)))))(((((...-....))).)))))))))))....)))...... ( -21.08) >DroSec_CAF1 122433 91 + 1 CUUUACCGAUUGCAAUCAAC-----UUUC-CCUCGG-------CGAGC-----AGCUCUAUUAUCUCUGCGGUUG----------UU-UUAUCAGCGCAUUGCAAUCUUUUGUGAAGCGA ((((((.((((((((((...-----....-......-------...((-----((...........)))).((((----------..-....))))).)))))))))....))))))... ( -21.00) >DroSim_CAF1 128354 91 + 1 CUUUACCGAUUGCAAUCAAC-----UUUC-CCUCGG-------CGGGC-----AGCUCUAUUAUCUCUGCGGUUG----------UU-UUAUCACCGCAUUGCAAUCUUUUGUGAAGCGA ((((((.(((((((((....-----...(-((....-------.))).-----...............(((((.(----------..-....)))))))))))))))....))))))... ( -24.20) >DroYak_CAF1 125593 92 + 1 CUUUACAGAUUGCAAUCAAC-----UUUCCCCUUGG-------CGAGC-----AGCUCUAUUAUCUCUGCGGUUG----------UU-UUAUCACCGCAUUGCAAUCUUUUGUGAAGCGC ((((((((((((((((....-----.........((-------(....-----.)))...........(((((.(----------..-....)))))))))))))))...)))))))... ( -24.90) >DroAna_CAF1 119225 97 + 1 GUUUCCCGAUUGCAAUCAAC-----UUUC-CCUCAU-------UCAUUAUUUGGUCUUUAUUAUCUCUGUGGUUG----------UUUUUAUCACCGCAUUGCGAUCUUUUGUACUGCAA .......(((((((((....-----....-((....-------.........))..............(((((.(----------(....)).))))))))))))))............. ( -15.92) >consensus CUUUACCGAUUGCAAUCAAC_____UUUC_CCUCGG_______CGAGC_____AGCUCUAUUAUCUCUGCGGUUG__________UU_UUAUCACCGCAUUGCAAUCUUUUGUGAAGCGA .......(((((((((............................((((......))))..........((((......................)))))))))))))............. (-12.51 = -13.82 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:26 2006