Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,621,043 – 7,621,150 |
Length | 107 |
Max. P | 0.536344 |
Location | 7,621,043 – 7,621,150 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 77.68 |
Mean single sequence MFE | -25.70 |
Consensus MFE | -15.98 |
Energy contribution | -16.30 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.18 |
Mean z-score | -1.58 |
Structure conservation index | 0.62 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.536344 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7621043 107 - 22407834 CUCCGAUCGGCGUCUGUCAUGCAUCAUUAGCGGUCUCAA-AGGCGACCGAUCUGGGUCCAAUAUCCGUGCAUAUAUGGCAUGUACUAGUAUAUAUGUAUAUGUACAUA (((.(((((((((((....(((.......))).......-))))).)))))).)))..........(((((((((((..(((((....))))).)))))))))))... ( -34.90) >DroSec_CAF1 120543 94 - 1 CUCCGAUCGGCGUCUGUCAUGCAUCAUUAGCGGUCUCAA-AGGCGACCGAUCUGGGUCCAAUAUCCGUGCAUAUAUGGCAUGUA---------AGGUAUAUG----UA (((.(((((((((((....(((.......))).......-))))).)))))).)))....((((((((((.......)))))..---------.)))))...----.. ( -27.00) >DroSim_CAF1 126482 83 - 1 CUCCGAUCGGCGUCUGUCAUGCAUCAUUAGCGGUCUCAA-AGGCGACCGAUCUGGGUCCAAUAUCCGUGCAUAUAUGGCAUG------------------------UA (((.(((((((((((....(((.......))).......-))))).)))))).))).........(((((.......)))))------------------------.. ( -25.30) >DroYak_CAF1 123612 90 - 1 CUCCGAUCGGCGUCUGUCAUGCAUCAUUAGCGCUCUCAA-AGGCGACCGAUCUGGGUCCAAUAUCCGUGCAUAUAUA-----UACAAG--------UAUCUA----UA (((.(((((((((((.....((.........))......-))))).)))))).)))...............((((.(-----((....--------))).))----)) ( -20.10) >DroAna_CAF1 116815 89 - 1 CUCCGAUCAACGUCUGUCAUGCAUCAUUAGUGGUCUCAAAAGGCGACCGAUC--GAACCAAUAUACUCGUAUAUAGGUUCUC-----C--------CAUACA----UA ....((((..(((((.....(.((((....))))).....)))))...))))--(((((.(((((....))))).)))))..-----.--------......----.. ( -21.20) >consensus CUCCGAUCGGCGUCUGUCAUGCAUCAUUAGCGGUCUCAA_AGGCGACCGAUCUGGGUCCAAUAUCCGUGCAUAUAUGGCAUGUA____________UAUAUA____UA .((((((((((((((....(((.......)))........))))).)))))).)))........(((((....))))).............................. (-15.98 = -16.30 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:25 2006