Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,617,727 – 7,617,838 |
Length | 111 |
Max. P | 0.617886 |
Location | 7,617,727 – 7,617,838 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.93 |
Mean single sequence MFE | -18.82 |
Consensus MFE | -15.29 |
Energy contribution | -15.82 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.06 |
Mean z-score | -1.38 |
Structure conservation index | 0.81 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.617886 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7617727 111 - 22407834 AAGACGAUUAAUAUCACUUAAUUAAGGUGAAAAUGUAGAUGCCUGACAGCUGUCAAAA----GCGUAUGAAACGUAUCGAAUGGCAGCAGAGCAACAACAAC-----AAAAAAAAGAGUA ...((........((((((.....))))))...(((.(.(((((....(((((((...----((((.....))))......))))))))).))).).)))..-----..........)). ( -21.10) >DroSec_CAF1 117236 105 - 1 AAGACGAUUAAUAUCACUUAAUUAAGGUGAAAAUUUAGAUGCCUGACAGCUGUCAAAA----GCGUAUGAAACGUAUCAAAUGACAGCAGAGCAAC-----------ACAAAAUAGAGUA .....(((....)))((((.(((...(((.....((((....))))..(((((((...----((((.....))))......))))))).......)-----------))..))).)))). ( -19.90) >DroEre_CAF1 117440 102 - 1 AAGACGAUUAAUAUCACUUAAUUAAGGUGAAAAUGUAGAUGCCUGACAGCUGUCAAAA----GCGUAUGAAACGUAUCGGAUGGCAGCAGACCGACA--------------AAAAAAGUA ....((.......((((((.....))))))............(((...((((((....----((((.....))))....))))))..)))..))...--------------......... ( -19.20) >DroYak_CAF1 120167 116 - 1 AAGACGAUUAAUAUCACUUAAUUAAGGUGAAAAUGUAGAUGCCUGACAGCUGUCAAAA----GCGUAUGAAACGUAUCGAAUGGCAGCAGACCAACAACAAAAAAGAAAAAAAAAAAGUA .............((((((.....))))))...(((((....)).)))(((((((...----((((.....))))......)))))))................................ ( -17.60) >DroAna_CAF1 113339 96 - 1 AAGACGAUUAAUAUCACUUAAUUAAGGUGAAAAUGUAGAUGCCCGACAGCUGUCAAAA----GCGUAUGAAACGUAUCAAAUGGCAG--------------------ACAAAAAAGUGCA ...((........((((((.....))))))...(((...((((.(((....)))....----((((.....)))).......)))).--------------------))).....))... ( -18.30) >DroPer_CAF1 146601 98 - 1 ACGACGAUUAAUAUCACUUAAUUAAGGUGAAAAUUUAGAUGCCCGACAGCUGUCAGAAAGCGGCCUAUGAAACGUAUCAAAUGGCAU----------------------AAAAUACUCUG .............((((((.....))))))........(((((.....(((((......)))))...(((......)))...)))))----------------------........... ( -16.80) >consensus AAGACGAUUAAUAUCACUUAAUUAAGGUGAAAAUGUAGAUGCCUGACAGCUGUCAAAA____GCGUAUGAAACGUAUCAAAUGGCAGCAGA_CAAC___________A_AAAAAAGAGUA .............((((((.....))))))..................(((((((.......((((.....))))......)))))))................................ (-15.29 = -15.82 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:24 2006