Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 781,958 – 782,075 |
Length | 117 |
Max. P | 0.973580 |
Location | 781,958 – 782,075 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.36 |
Mean single sequence MFE | -32.20 |
Consensus MFE | -21.40 |
Energy contribution | -20.93 |
Covariance contribution | -0.47 |
Combinations/Pair | 1.30 |
Mean z-score | -2.12 |
Structure conservation index | 0.66 |
SVM decision value | 1.71 |
SVM RNA-class probability | 0.973580 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 781958 117 + 22407834 GCAGUACUUCCUGCAGCCGGACUUCCGGCUGUGGUACACAUUCGCCUACUACCCCAUCAUCGCCAUGCUCAACUGCUUCUGCAGCUUGUGGUGAGUAGCUGU---CCUAUGGCAAAAACA ...(((((....((((((((....)))))))))))))......(((.............((((((....(((((((....)))).)))))))))((((....---.)))))))....... ( -40.00) >DroPse_CAF1 38609 91 + 1 GCAGUACUUCCUGCAGCCGGACUUCCGGCUGUGGUACACCUUCGCCUACUACCCCAUCAUCGCGAUGCUGAACUGCUUCUGCAGUCUGUGG----------------------------- ((((((((....((((((((....)))))))))))))....((((................)))))))...(((((....)))))......----------------------------- ( -31.89) >DroEre_CAF1 42002 112 + 1 GCAGUACUUCCUGCAGCCGGACUUCCGGCUGUGGUACACAUUCGCCUACUACCCCAUCAUCGCCAUGCUCAACUGCUUCUGCAGUUUGUGGUGAGCACCU--------AUGGUAAAACCA ((.(((((....((((((((....)))))))))))))......................((((((((...((((((....))))))))))))))))....--------.(((.....))) ( -40.90) >DroMoj_CAF1 60504 91 + 1 GCAGUAUUUUCUGCAGCCCGAUUUUCGCUUAUGGUACACCUUCGCCUAUUAUCCAAUCAUCGCGAUGCUGAAUUGUUUCUGCAGCCUGUGG----------------------------- ((((......((((((..((((((..((....((....)).((((................)))).)).))))))...)))))).))))..----------------------------- ( -18.39) >DroAna_CAF1 42639 118 + 1 CCAGUAUUUCCUCCAGCCGGACUUCCGGUUGUGGUAUACCUUCGCCUACUACCCCAUCAUCGCCAUGCUCAACUGCUUCUGCAGCCUGUGGUGUGUAUAGGAUCUUCUCCAGC--AACCU ...((((..((..(((((((....))))))).)).))))....((............((.((((((......((((....))))...))))))))....(((.....))).))--..... ( -31.30) >DroPer_CAF1 41793 91 + 1 GCAGUACUUCCUGCAGCCGGACUUCCGGCUGUGGUACACCUUCGCCUACUACCCCAUCAUCGCGAUGCUGAACUGCUUCUGCAGCCUGUGG----------------------------- ((((((((....((((((((....)))))))))))))....((((................)))))))....((((....)))).......----------------------------- ( -30.69) >consensus GCAGUACUUCCUGCAGCCGGACUUCCGGCUGUGGUACACCUUCGCCUACUACCCCAUCAUCGCCAUGCUCAACUGCUUCUGCAGCCUGUGG_____________________________ ...(((((....((((((((....)))))))))))))........((((............((...))....((((....))))...))))............................. (-21.40 = -20.93 + -0.47)
Location | 781,958 – 782,075 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.36 |
Mean single sequence MFE | -33.52 |
Consensus MFE | -22.97 |
Energy contribution | -24.08 |
Covariance contribution | 1.11 |
Combinations/Pair | 1.10 |
Mean z-score | -1.18 |
Structure conservation index | 0.69 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.699973 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 781958 117 - 22407834 UGUUUUUGCCAUAGG---ACAGCUACUCACCACAAGCUGCAGAAGCAGUUGAGCAUGGCGAUGAUGGGGUAGUAGGCGAAUGUGUACCACAGCCGGAAGUCCGGCUGCAGGAAGUACUGC ....((((((.((..---((..((((((.(((..((((((....)))))).....))).)).).))).))..)))))))).(((...)))((((((....))))))((((......)))) ( -37.60) >DroPse_CAF1 38609 91 - 1 -----------------------------CCACAGACUGCAGAAGCAGUUCAGCAUCGCGAUGAUGGGGUAGUAGGCGAAGGUGUACCACAGCCGGAAGUCCGGCUGCAGGAAGUACUGC -----------------------------((...((((((....))))))...((((.....))))))((.(((.((....)).))).))((((((....))))))((((......)))) ( -35.00) >DroEre_CAF1 42002 112 - 1 UGGUUUUACCAU--------AGGUGCUCACCACAAACUGCAGAAGCAGUUGAGCAUGGCGAUGAUGGGGUAGUAGGCGAAUGUGUACCACAGCCGGAAGUCCGGCUGCAGGAAGUACUGC ........((((--------...(((.((.....((((((....)))))).....)))))...)))).((.(((.((....)).))).))((((((....))))))((((......)))) ( -38.10) >DroMoj_CAF1 60504 91 - 1 -----------------------------CCACAGGCUGCAGAAACAAUUCAGCAUCGCGAUGAUUGGAUAAUAGGCGAAGGUGUACCAUAAGCGAAAAUCGGGCUGCAGAAAAUACUGC -----------------------------...(((.((((((...(.(((((((((....))).)))))).....((...((....))....)).......)..))))))......))). ( -19.40) >DroAna_CAF1 42639 118 - 1 AGGUU--GCUGGAGAAGAUCCUAUACACACCACAGGCUGCAGAAGCAGUUGAGCAUGGCGAUGAUGGGGUAGUAGGCGAAGGUAUACCACAACCGGAAGUCCGGCUGGAGGAAAUACUGG ...((--(((....(..(((((((.(((.(((..((((((....)))))).....))).).)))))))))..).))))).(((((.((.((.((((....)))).))..))..))))).. ( -36.50) >DroPer_CAF1 41793 91 - 1 -----------------------------CCACAGGCUGCAGAAGCAGUUCAGCAUCGCGAUGAUGGGGUAGUAGGCGAAGGUGUACCACAGCCGGAAGUCCGGCUGCAGGAAGUACUGC -----------------------------((...((((((....))))))...((((.....))))))((.(((.((....)).))).))((((((....))))))((((......)))) ( -34.50) >consensus _____________________________CCACAGGCUGCAGAAGCAGUUCAGCAUCGCGAUGAUGGGGUAGUAGGCGAAGGUGUACCACAGCCGGAAGUCCGGCUGCAGGAAGUACUGC .............................(((((((((((....))))))..((...))..)).))).((.(((.((....)).))).))((((((....))))))((((......)))) (-22.97 = -24.08 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:42 2006