Locus 2709

Sequence ID 2L_DroMel_CAF1
Location 7,609,396 – 7,609,499
Length 103
Max. P 0.787737
window4315

overview

Window 5

Location 7,609,396 – 7,609,499
Length 103
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 96.32
Mean single sequence MFE -22.36
Consensus MFE -19.94
Energy contribution -20.58
Covariance contribution 0.64
Combinations/Pair 1.03
Mean z-score -1.38
Structure conservation index 0.89
SVM decision value 0.58
SVM RNA-class probability 0.787737
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7609396 103 + 22407834
UUC-CCAGCUGAGUGAUCAUAAGAAGUUUCUAAGAUUUUUUCAAUGCUAACAAAUUAUCAUAAUGGUGAUGGCUGAAGAAUUCUGACAUCACUUUAACGCUGUC
...-.((((.(((((((....(((....))).(((.(((((((..(((.....((((((.....)))))))))))))))).)))...)))))))....)))).. ( -23.10)
>DroSec_CAF1 109027 103 + 1
UUC-CCAGCUGAGUGAUCAUAAGAAGUUUCUAAGAUUUUUUCAAUGCUAACAAAUUAUCAUAAUGGUGAUGGCUGAAGAAUUCUGACAUCACUUUAACGCUGUC
...-.((((.(((((((....(((....))).(((.(((((((..(((.....((((((.....)))))))))))))))).)))...)))))))....)))).. ( -23.10)
>DroSim_CAF1 115187 103 + 1
UUC-CCAGCUGAGUGAUCAUAAGAAGUUUCUAAGAUUUUUUCAAUGCUAACAAAUUAUCAUAAUGGUGAUGGCUGAAGAAUUCUGACAUCACUUUAACGCUGUC
...-.((((.(((((((....(((....))).(((.(((((((..(((.....((((((.....)))))))))))))))).)))...)))))))....)))).. ( -23.10)
>DroEre_CAF1 109309 101 + 1
UUC-CCAGCUGAGUGAUCAUAAGAAGUUUCUAAGGUUUUUUCAAUGCUAACAAAUUAUCAUAAUGGUGAUGGCUGAAGAACUCUGACAUC--UUUAACGCUGUC
...-.(((((((....))).((((.(((....((..(((((((..(((.....((((((.....))))))))))))))))..))))).))--))....)))).. ( -20.00)
>DroYak_CAF1 111859 104 + 1
UUCCCCAGCUGAGUGAUCAUAAGAAGCAUCUAAGAUUAUUUCUAUGCUAACAAAUUAUCAUAAUGGUGAUGGCUGAAGAACUCUGACAUCACUUUAACGCUGUC
.....((((.(((((((....((((((((...(((.....))))))))......(((((((....))))))).........)))...)))))))....)))).. ( -22.50)
>consensus
UUC_CCAGCUGAGUGAUCAUAAGAAGUUUCUAAGAUUUUUUCAAUGCUAACAAAUUAUCAUAAUGGUGAUGGCUGAAGAAUUCUGACAUCACUUUAACGCUGUC
.....((((.(((((((....(((....))).(((.(((((((..(((.....((((((.....)))))))))))))))).)))...)))))))....)))).. (-19.94 = -20.58 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:22 2006