Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,605,951 – 7,606,070 |
Length | 119 |
Max. P | 0.979455 |
Location | 7,605,951 – 7,606,070 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 93.61 |
Mean single sequence MFE | -30.37 |
Consensus MFE | -24.30 |
Energy contribution | -24.66 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.09 |
Mean z-score | -1.62 |
Structure conservation index | 0.80 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.721087 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7605951 119 + 22407834 UAUUCAGAGGUUUGGUGACUACUUCAAUAAAUAUGGCAAAACCUUCCGCCUGUGGAUUCUAGGCGAGUGUCUUAUUUACACGAAGGAUCUAAAAUAUUUUGAAUCCAUACUGAGUAGUA (((((((((((..(....).)))))......(((((((((((((((((((((.......)))))).((((.......)))))))))..........)))))...))))).))))))... ( -30.90) >DroSec_CAF1 105582 119 + 1 UAUUCAGAAGUUUGGUGACUACUUCAAUAAAUAUGGCAAAACCUUCCGCCUGUGGAUUCUAGGCGAGUGUCUUAUUUACACGAAGGAUCUAAAAUACUUUGAAAGCAUUCUGAGUAGUA ((((((((((((((....)....((((....(((.......(((((((((((.......)))))).((((.......))))))))).......)))..)))))))).)))))))))... ( -30.54) >DroSim_CAF1 111760 119 + 1 UAUUCAGAAGUUUGGUGACUACUUCAAUAAAUAUGGCAAAACCUUCCGCCUGUGGAUUUUAGGCGAGUGUCUUAUUUACACGAAGGAUCUAAAAUAUUUUGAAAGCAUUCUGAGUAGUA ((((((((((((((....)....((((..(((((.......(((((((((((.......)))))).((((.......))))))))).......))))))))))))).)))))))))... ( -33.24) >DroEre_CAF1 105890 119 + 1 UAUUCAGAGGUUUGGCGACUACUUCAAUAAAUAUGGCAAAACCUUCCGCCUGUGGAUUCUGGGCGAGUGCCUUAUUUACACAAAGGAUCUAAAGUACUUUGAAGGCAUUCUAAGUAGUA ..(((((((((((.((...................)).))))).((((....)))).)))))).(((((((((.......(((((...........))))))))))))))......... ( -27.92) >DroYak_CAF1 108464 119 + 1 UAUUCAGAGGUUUGGUGACUACUUCAAUAAAUAUGGCAAUACCUUCCGCCUGUGGGUUCUAGGCGAGUGUCUGAUUUACACAAAGGAUCUAAAGUACUUUGAAGGCAUUCUGAGUAGCA (((((((((((..(....)..((((((....(((.......((((.((((((.......)))))).((((.......)))).)))).......)))..)))))))).)))))))))... ( -29.24) >consensus UAUUCAGAGGUUUGGUGACUACUUCAAUAAAUAUGGCAAAACCUUCCGCCUGUGGAUUCUAGGCGAGUGUCUUAUUUACACGAAGGAUCUAAAAUACUUUGAAAGCAUUCUGAGUAGUA ((((((((((((....))))..(((((....(((.......(((((((((((.......)))))).((((.......))))))))).......)))..))))).....))))))))... (-24.30 = -24.66 + 0.36)
Location | 7,605,951 – 7,606,070 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 93.61 |
Mean single sequence MFE | -27.71 |
Consensus MFE | -23.14 |
Energy contribution | -23.18 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.14 |
Mean z-score | -2.05 |
Structure conservation index | 0.84 |
SVM decision value | 1.84 |
SVM RNA-class probability | 0.979455 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7605951 119 - 22407834 UACUACUCAGUAUGGAUUCAAAAUAUUUUAGAUCCUUCGUGUAAAUAAGACACUCGCCUAGAAUCCACAGGCGGAAGGUUUUGCCAUAUUUAUUGAAGUAGUCACCAAACCUCUGAAUA .((((((((((((((((((...........((....))((((.......)))).......)))))))..((((((....)))))).....))))).))))))................. ( -28.20) >DroSec_CAF1 105582 119 - 1 UACUACUCAGAAUGCUUUCAAAGUAUUUUAGAUCCUUCGUGUAAAUAAGACACUCGCCUAGAAUCCACAGGCGGAAGGUUUUGCCAUAUUUAUUGAAGUAGUCACCAAACUUCUGAAUA ......((((((((((((..((((((..((((.(((((((((.......)))).(((((.(......))))))))))).))))..))))))...))))))((......))))))))... ( -28.80) >DroSim_CAF1 111760 119 - 1 UACUACUCAGAAUGCUUUCAAAAUAUUUUAGAUCCUUCGUGUAAAUAAGACACUCGCCUAAAAUCCACAGGCGGAAGGUUUUGCCAUAUUUAUUGAAGUAGUCACCAAACUUCUGAAUA ......((((((((((((..((((((..((((.(((((((((.......)))).(((((.........)))))))))).))))..))))))...))))))((......))))))))... ( -28.70) >DroEre_CAF1 105890 119 - 1 UACUACUUAGAAUGCCUUCAAAGUACUUUAGAUCCUUUGUGUAAAUAAGGCACUCGCCCAGAAUCCACAGGCGGAAGGUUUUGCCAUAUUUAUUGAAGUAGUCGCCAAACCUCUGAAUA ...(((((.(((....))).))))).(((((((((((((((.......(((....))).......)))))).))).(((((.((..(((((....)))))...)).))))))))))).. ( -27.14) >DroYak_CAF1 108464 119 - 1 UGCUACUCAGAAUGCCUUCAAAGUACUUUAGAUCCUUUGUGUAAAUCAGACACUCGCCUAGAACCCACAGGCGGAAGGUAUUGCCAUAUUUAUUGAAGUAGUCACCAAACCUCUGAAUA .((((((((((((((((((...................((((.......)))).(((((.(......)))))))))))))))..........))).))))))................. ( -25.70) >consensus UACUACUCAGAAUGCCUUCAAAGUAUUUUAGAUCCUUCGUGUAAAUAAGACACUCGCCUAGAAUCCACAGGCGGAAGGUUUUGCCAUAUUUAUUGAAGUAGUCACCAAACCUCUGAAUA .(((((((((((....))).((((((..((((.(((((((((.......)))).(((((.........)))))))))).))))..))))))..)).))))))................. (-23.14 = -23.18 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:09 2006