| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,599,020 – 7,599,121 |
| Length | 101 |
| Max. P | 0.896065 |
| Location | 7,599,020 – 7,599,121 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 78.78 |
| Mean single sequence MFE | -23.09 |
| Consensus MFE | -13.44 |
| Energy contribution | -13.68 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.28 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.896065 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7599020 101 + 22407834 CCCUACCUAUACAUACAUGUUCCACCCCCUCCACGU-CCGCUGCUCCAUUUGCAUUUGUAUUGCAUAUGUUUUCAUUAAUCUUUG-----UUUCGGUGGAAAGGGGA .........................(((((.....(-((((((...(((.((((.......)))).)))....((........))-----...))))))).))))). ( -21.80) >DroSec_CAF1 98641 97 + 1 CCCUACCUAUAC----AUGUUCCACCCCCUUCACGC-CCGCUGCUCCAUUUGCAUUUGUAUUGCAUAUGUUUUCAUUAAUCUUAG-----UUUUGGUGGAAAGGGGA ............----.........((((((..(((-(.((((...(((.((((.......)))).))).............)))-----)...))))..)))))). ( -21.79) >DroSim_CAF1 103493 97 + 1 CCCUACCUAUAC----AUAUUCCACCCCCUCCACGC-CCGCUGCUCCAUUUGCAUUUGUAUUGCAUAUGUUUUCAUUAAUCUUAG-----UUUUGGUGGAAAGGGGA ............----........((((.(((((((-.....))..(((.((((.......)))).)))................-----.....)))))..)))). ( -21.00) >DroEre_CAF1 98786 105 + 1 ACCUACCUAUAUCUGUAUGUUCCACCCCCUCUACGC-CCGCUG-UGCAUUUGCAUUUGUAUUGCAUAUGUUUUCAUUAAUCUCGGCUUGGCUUUGGGGGAAGGGGGA .(((.((((((....)))......(((((.....((-(.((((-.((((.((((.......)))).))))............))))..)))...))))).)))))). ( -29.32) >DroYak_CAF1 101322 96 + 1 CCCUACCUAUC----CAUGUACCACCCCCUCUCCGC-ACGCUGCUACAUUUGCAUUUGUAUUGCAUAUGUUUUCAUUAAUCUUAG------UUUGGGGGAAGGGGGA ...........----.........((((((..((.(-(.((((..((((.((((.......)))).))))............)))------).)).))..)))))). ( -29.14) >DroPer_CAF1 129756 84 + 1 CCCUCCC------------CUCCCCCCCA-CUCCCCACCAUUA-CGCAUUCGCAUUUGUUUUGCAUAUGUUUUCAUUAAUCUUAC-----UUACGGGG-A---GAGA .......------------..........-((((((.......-.(((...((....))..)))..(((....))).........-----....))))-)---)... ( -15.50) >consensus CCCUACCUAUAC____AUGUUCCACCCCCUCCACGC_CCGCUGCUCCAUUUGCAUUUGUAUUGCAUAUGUUUUCAUUAAUCUUAG_____UUUUGGGGGAAAGGGGA .........................(((((((((((...)).....(((.((((.......)))).)))..........................))))..))))). (-13.44 = -13.68 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:07 2006