Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,564,919 – 7,565,053 |
Length | 134 |
Max. P | 0.999004 |
Location | 7,564,919 – 7,565,014 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 90.17 |
Mean single sequence MFE | -23.20 |
Consensus MFE | -20.58 |
Energy contribution | -20.66 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.17 |
Mean z-score | -2.45 |
Structure conservation index | 0.89 |
SVM decision value | 3.32 |
SVM RNA-class probability | 0.999004 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7564919 95 + 22407834 CGGCACGGAAAAUCACCACAGGCCUAUGCUCCGGUCCCUAUUUCCUUUUCUACACUGAAAUAAAUAAGCGCCGAGAGCGCAUCCUAAAAACUUUA .(((..((.......))....)))...((((((((.(.(((((...((((......)))).))))).).)))).))))................. ( -21.50) >DroSec_CAF1 64656 91 + 1 CGGCACGGAAAAUCACCACAGGCCUAUGCUCCGGUCCCUAUUUCCUUUCCAACACUGCAAUAAAUAGGCACCGAGAGCGCAUCCUAAAAAC---- .(((..((.......))....)))...((((((((.(((((((...((.((....)).)).))))))).)))).)))).............---- ( -23.70) >DroSim_CAF1 69351 91 + 1 CGGCACGGAAAAUCACCACAGGCCUAUGCUCCGGUCCCUAUUUCCUUUCCAACACUGAAAUUAAUAGGCACCGAGAGCGCAUCCUAAAAAC---- .(((..((.......))....)))...((((((((.((((((...((((.......))))..)))))).)))).)))).............---- ( -25.50) >DroEre_CAF1 63766 95 + 1 CGGCACGGAAAAUCACCGCAGGCCUAUGCUACAGUCCCUAUUUCCUUUCCUACACUGAAACAAAUAGGCACUGAGAGUGCAUCCCAAGAACUUUA ..((((((.......))(((......)))..((((.(((((((..((((.......)))).))))))).))))...))))............... ( -21.10) >DroYak_CAF1 66037 95 + 1 CGGCACGGAAAAUCACCACAGGCCUAUGCUCCGGUCCCUAUUUCCUUUGCUACACUGAAAUAAAUAGGCACUGAGAGCGCAUCCUGAAAACUUUU ......((.......)).((((....(((((((((.(((((((..(((........)))..))))))).)))).)))))...))))......... ( -24.20) >consensus CGGCACGGAAAAUCACCACAGGCCUAUGCUCCGGUCCCUAUUUCCUUUCCUACACUGAAAUAAAUAGGCACCGAGAGCGCAUCCUAAAAACUUU_ .(((..((.......))....)))...((((((((.(((((((..(((........)))..))))))).)))).))))................. (-20.58 = -20.66 + 0.08)
Location | 7,564,941 – 7,565,053 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 78.25 |
Mean single sequence MFE | -22.71 |
Consensus MFE | -15.78 |
Energy contribution | -15.86 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.22 |
Mean z-score | -2.72 |
Structure conservation index | 0.69 |
SVM decision value | 2.70 |
SVM RNA-class probability | 0.996466 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7564941 112 + 22407834 CCUAUGCUCCGGUCCCUAUUUCCUUUUCUACACUGAAAUAAAUAAGCGCCGAGAGCGCAUCCUAAAAACUUUACGC-AAAUAGCCUUUCUCAAACUUGGAAGCGAACUACACA .....((((((((.(.(((((...((((......)))).))))).).)))).))))((.(((............((-.....)).............))).)).......... ( -22.71) >DroSec_CAF1 64678 93 + 1 CCUAUGCUCCGGUCCCUAUUUCCUUUCCAACACUGCAAUAAAUAGGCACCGAGAGCGCAUCCUAAAAAC--------------------UCAAACUUGAAAGCGAACUACACA .....((((((((.(((((((...((.((....)).)).))))))).)))).)))).............--------------------........................ ( -18.90) >DroSim_CAF1 69373 93 + 1 CCUAUGCUCCGGUCCCUAUUUCCUUUCCAACACUGAAAUUAAUAGGCACCGAGAGCGCAUCCUAAAAAC--------------------UCAAACCUGGAAGCGAACUACACA .....((((((((.((((((...((((.......))))..)))))).)))).))))((.(((.......--------------------........))).)).......... ( -25.76) >DroEre_CAF1 63788 113 + 1 CCUAUGCUACAGUCCCUAUUUCCUUUCCUACACUGAAACAAAUAGGCACUGAGAGUGCAUCCCAAGAACUUUAAGCCAAGUAGCCCUACUCAAACUUGGAACCGAGCUAUAUA .....(((.((((.(((((((..((((.......)))).))))))).))))(((((...........)))))...((((((............)))))).....)))...... ( -21.20) >DroYak_CAF1 66059 113 + 1 CCUAUGCUCCGGUCCCUAUUUCCUUUGCUACACUGAAAUAAAUAGGCACUGAGAGCGCAUCCUGAAAACUUUUAGCGAAAUAGUCUUUCUCUAAAUUGUAUCCGAGCUACAUA .....((((((((.(((((((..(((........)))..))))))).)))).))))((.((..((.....(((((.((((.....)))).))))).....)).))))...... ( -25.00) >consensus CCUAUGCUCCGGUCCCUAUUUCCUUUCCUACACUGAAAUAAAUAGGCACCGAGAGCGCAUCCUAAAAACUUU__GC_AA_UAG_C_U_CUCAAACUUGGAAGCGAACUACACA .....((((((((.(((((((..(((........)))..))))))).)))).))))......................................................... (-15.78 = -15.86 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:02 2006