Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,559,737 – 7,559,869 |
Length | 132 |
Max. P | 0.986665 |
Location | 7,559,737 – 7,559,831 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 76.49 |
Mean single sequence MFE | -15.14 |
Consensus MFE | -9.93 |
Energy contribution | -10.68 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.07 |
Mean z-score | -1.70 |
Structure conservation index | 0.66 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.718223 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7559737 94 + 22407834 UUAAGGUUUUUUUUUUUGUUUUUUACAUUUUCGUGC-CACACGCCAUUUUCAUGGCGUAGCCCC-------AUAGCCCCUGCUGGCCGAAAAACGUUGCUCU .(((.((.........(((.....)))((((((.((-(..(((((((....)))))))......-------..(((....)))))))))))))).))).... ( -22.40) >DroSec_CAF1 59450 83 + 1 -------------UUUUGUAUUUCACAUUUUCGUGC-CACACGCCAUUUUCAUGGCAUAGCCCC-----ACCUACCCCCUGCUAAACGAAAAACGUUGCUCU -------------..............(((((((..-.....(((((....))))).((((...-----...........)))).))))))).......... ( -13.94) >DroSim_CAF1 64160 89 + 1 -------------UUUUGUUUUUUACAUUUUCGUGCCCACACGCCAUUUUCAUGGCAUAGCCCCCCCCCCCCUACCCCCUGCUGAACGAAAAACGUUGCUCU -------------..............(((((((........(((((....))))).((((...................)))).))))))).......... ( -13.31) >DroEre_CAF1 58626 74 + 1 -------------UUCUGUUUUUCACAAUUUCGUGC-CACACGCCAUUUUCAUGCGAUACCC--------------CCCUGCUGGCCGAAAAUCGUUGCUCU -------------...............(((((.((-(((((((.........)))......--------------...)).)))))))))........... ( -10.90) >consensus _____________UUUUGUUUUUCACAUUUUCGUGC_CACACGCCAUUUUCAUGGCAUAGCCCC_______CUACCCCCUGCUGAACGAAAAACGUUGCUCU .................(((((((........(((....)))(((((....)))))...............................)))))))........ ( -9.93 = -10.68 + 0.75)
Location | 7,559,737 – 7,559,831 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 76.49 |
Mean single sequence MFE | -22.23 |
Consensus MFE | -15.02 |
Energy contribution | -14.52 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.21 |
Mean z-score | -2.24 |
Structure conservation index | 0.68 |
SVM decision value | 2.05 |
SVM RNA-class probability | 0.986665 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7559737 94 - 22407834 AGAGCAACGUUUUUCGGCCAGCAGGGGCUAU-------GGGGCUACGCCAUGAAAAUGGCGUGUG-GCACGAAAAUGUAAAAAACAAAAAAAAAAACCUUAA ......(((((((.((((((.....((((..-------..))))(((((((....))))))).))-)).)))))))))........................ ( -28.80) >DroSec_CAF1 59450 83 - 1 AGAGCAACGUUUUUCGUUUAGCAGGGGGUAGGU-----GGGGCUAUGCCAUGAAAAUGGCGUGUG-GCACGAAAAUGUGAAAUACAAAA------------- ..(((..((..(.((.((.....)).)).)..)-----)..)))..(((((....)))))((((.-.(((......)))..))))....------------- ( -22.30) >DroSim_CAF1 64160 89 - 1 AGAGCAACGUUUUUCGUUCAGCAGGGGGUAGGGGGGGGGGGGCUAUGCCAUGAAAAUGGCGUGUGGGCACGAAAAUGUAAAAAACAAAA------------- ...((.((((((..(.(((.((.....))...))).)..)))).(((((((....)))))))))..)).....................------------- ( -21.30) >DroEre_CAF1 58626 74 - 1 AGAGCAACGAUUUUCGGCCAGCAGGG--------------GGGUAUCGCAUGAAAAUGGCGUGUG-GCACGAAAUUGUGAAAAACAGAA------------- ......(((((((.((((((.((.((--------------(....)).(((....))).).))))-)).)))))))))...........------------- ( -16.50) >consensus AGAGCAACGUUUUUCGGCCAGCAGGGGGUAG_______GGGGCUAUGCCAUGAAAAUGGCGUGUG_GCACGAAAAUGUAAAAAACAAAA_____________ ......(((((((.((.((....))..................((((((((....))))))))......)))))))))........................ (-15.02 = -14.52 + -0.50)
Location | 7,559,764 – 7,559,869 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 80.37 |
Mean single sequence MFE | -23.68 |
Consensus MFE | -12.76 |
Energy contribution | -13.37 |
Covariance contribution | 0.61 |
Combinations/Pair | 1.05 |
Mean z-score | -2.11 |
Structure conservation index | 0.54 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.645257 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7559764 105 - 22407834 UCAAGAAUUAUGAAAAAUGUGUUGCAAAAAAAAAAUAGAGAGCAACG---UUUUUCGGCCAGCAGGGGCUAU-------GGGGCUACGCCAUGAAAAUGGCGUGUG-GCACGAAAA .................(((((..(...............(((..((---(.....((((......))))))-------)..)))(((((((....))))))))..-))))).... ( -32.30) >DroSec_CAF1 59464 103 - 1 UCAAGAAUUAUGAAAAAUGUGUUGCAAA----AAAUAGAGAGCAACG---UUUUUCGUUUAGCAGGGGGUAGGU-----GGGGCUAUGCCAUGAAAAUGGCGUGUG-GCACGAAAA ((..(....(((((((((((..(((...----.........))))))---))))))))....).........((-----(..((.(((((((....))))))))).-.)))))... ( -26.80) >DroSim_CAF1 64174 109 - 1 UCAAGAAUUAUGAAAAAUGUGUUGCAAA----AAAUAGAGAGCAACG---UUUUUCGUUCAGCAGGGGGUAGGGGGGGGGGGGCUAUGCCAUGAAAAUGGCGUGUGGGCACGAAAA .................(((((..(...----........(((..(.---(((..((..(......)..)..)..))).)..)))(((((((....))))))))..).)))).... ( -25.40) >DroEre_CAF1 58640 94 - 1 UCAAGAAUUAUGAAAAAUGUGUUGCAAA----AAAUAGAGAGCAACG---AUUUUCGGCCAGCAGGG--------------GGGUAUCGCAUGAAAAUGGCGUGUG-GCACGAAAU .................(((((..((..----.....(((((.....---.))))).((((.(((.(--------------(....)).).))....)))).))..-))))).... ( -19.80) >DroYak_CAF1 60723 94 - 1 UCAAGAAUUAUGAAAAAUGUGUUGCAAA----AAAUAGAGAGCAACG---CUAUUUGGCCAGCAGGG--------------GGGUAUCGCAUGAAAAUGGCGUGUG-GCACGAAAU .................(((((..((..----((((((.(.....).---)))))).((((.(((.(--------------(....)).).))....)))).))..-))))).... ( -20.70) >DroPer_CAF1 80644 94 - 1 UCAAGAAUUAUGAAAAAUGUGUUGCAAAA--AAAAUAGAGAGCAAAGGUUUUUUUUUUU-A----------G--------GUGCAGAGAAAUGAAAAUGGCGUGCG-GCACGAAAA .................(((((((((...--((((.(((((((....))))))).))))-.----------.--------.......(..((....))..).))))-))))).... ( -17.10) >consensus UCAAGAAUUAUGAAAAAUGUGUUGCAAA____AAAUAGAGAGCAACG___UUUUUCGGCCAGCAGGG____G________GGGCUAUGCCAUGAAAAUGGCGUGUG_GCACGAAAA ...........((((((..((((((................))))))...)))))).................................(((....))).((((....)))).... (-12.76 = -13.37 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:00 2006