Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,558,983 – 7,559,083 |
Length | 100 |
Max. P | 0.854290 |
Location | 7,558,983 – 7,559,083 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 86.12 |
Mean single sequence MFE | -28.50 |
Consensus MFE | -22.39 |
Energy contribution | -23.59 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.10 |
Mean z-score | -2.90 |
Structure conservation index | 0.79 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.854290 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7558983 100 + 22407834 CAAAUUGCAUUGCAAAUGCA-----AUUGAAAAAUGCAAUUUGCAAUUGUCGCCAAUCUC--CUUUGCACGCACGCGUGUGAUGCGUGUGCAGUUGACAAAUUCAAA (((((((((((.(((.....-----.)))...)))))))))))...(((((((.((....--..))))..((((((((.....))))))))....)))))....... ( -31.80) >DroSec_CAF1 58724 100 + 1 UAAAUUGCAUUGCAAAUGCA-----AUUGAAAAAUGCAAUUUGCAAUUGUCGCCAAUCUC--CUUUGCACGCACGCGUGUGAUGCGUGUGCAGUUGACAAAUUCAAA (((((((((((.(((.....-----.)))...)))))))))))...(((((((.((....--..))))..((((((((.....))))))))....)))))....... ( -30.30) >DroSim_CAF1 63434 100 + 1 UAAAUUGCAUUGCAAAUGCA-----AUUGAAAAAUGCAAUUUGCAAUUGUCGCCAAUCUC--CUUUGCACGCACGCGUGUGAUGCGUGUGCAGUUGACAAAUUCAAA (((((((((((.(((.....-----.)))...)))))))))))...(((((((.((....--..))))..((((((((.....))))))))....)))))....... ( -30.30) >DroEre_CAF1 57872 100 + 1 CAAAUUGCAUUGCAAAUGCA-----AUUGAAAAAUGCAAUUUGCAAUUGUCGCCGAUCUC--CUUUGCACGCACGCGUGUGAUGCGUGUGCAGUUGACAAAUUCAAA (((((((((((.(((.....-----.)))...)))))))))))...(((((((.((....--.)).))..((((((((.....))))))))....)))))....... ( -31.80) >DroWil_CAF1 62205 99 + 1 CGAAUUGCAUUCCAAAUGCAUUAAAAAUAAAAAAUGCAUUUUGCAAUUGUCUCGUCUCGUCUCUUUGAUCG--------UUUAGCAGCUGCAGCUGACAAAUUUGUU ..(((((((....(((((((((..........))))))))))))))))..........(((.....))).(--------(((..((((....))))..))))..... ( -19.20) >DroYak_CAF1 59903 100 + 1 CAAAUUGCAUUGCAAAUGCA-----AUUGAAAAAUGCAAUUUGCAAUUGUCGCCGAUCUC--CUUUGCACGCACGAGUGUGAUGCGUGUGCAGUUGACAAAUUCAAA (((((((((((.(((.....-----.)))...)))))))))))((((((.(((((.....--..(..(((......)))..)..)).)))))))))........... ( -27.60) >consensus CAAAUUGCAUUGCAAAUGCA_____AUUGAAAAAUGCAAUUUGCAAUUGUCGCCAAUCUC__CUUUGCACGCACGCGUGUGAUGCGUGUGCAGUUGACAAAUUCAAA (((((((((((.(((...........)))...)))))))))))...(((((((.............))..((((((((.....))))))))....)))))....... (-22.39 = -23.59 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:58 2006