Locus 2698

Sequence ID 2L_DroMel_CAF1
Location 7,558,277 – 7,558,387
Length 110
Max. P 0.941647
window4288

overview

Window 8

Location 7,558,277 – 7,558,387
Length 110
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 94.84
Mean single sequence MFE -33.80
Consensus MFE -27.91
Energy contribution -28.59
Covariance contribution 0.68
Combinations/Pair 1.06
Mean z-score -1.94
Structure conservation index 0.83
SVM decision value 1.32
SVM RNA-class probability 0.941647
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7558277 110 - 22407834
CAGUGUAGAGCGACCUGA---UGCAGAUUGCAGGCAAAGCUUCGGCUUUACCUAGUUAAUAACUGCCCAUAAAUAUAGCUG-GCAGUGCAAGUGUUUGCCAAUUAGCGAGCAAA
.........((...((((---(((((((((((((.(((((....))))).)))........((((((..((....))...)-))))))))...))))))..)))))...))... ( -32.80)
>DroSec_CAF1 58009 114 - 1
CAGUGUAGAGCGACCUGAUGAUGCAGAUUGCAGCUAAAGCUUCGGCUUUACCUAGUUAAUAACUGCCCAUAAAUAUCGCUGGGCAGUGCAAGUGUUUGCCAAUUAGCGAGCUAA
........(((...(((((...(((((((((((.((((((....)))))).))........((((((((..........)))))))))))...))))))..)))))...))).. ( -38.10)
>DroSim_CAF1 62715 113 - 1
CAGUGUAGAGCGACCUGAUGAUGCAGAUUGCAGCCAAAGCUUCGGCUUUACCUAGUUAAUAACUGCCCAUAAAUAUCGCUG-GCAGUGCAAGUGUUUGCCAAUUAGCGAGCAAA
((.(((..(((((....(((..((((...((((..(((((....)))))..)).))......)))).))).....))))).-))).))....(((((((......))))))).. ( -31.90)
>DroEre_CAF1 57132 110 - 1
CAGUGUAGAGCGACCUGA---UGCAAAUUGAAGCCAAAGCUUCGGCUUUGCCUAGUUAAUAACUGCCCAUAAAUAUCGCUG-GCAGUGCAAGUGUUUGCCAAUUAGCGAGCAAA
(((.((......))))).---(((..(((((((.((((((....)))))).))..))))).((((((.............)-))))))))..(((((((......))))))).. ( -31.72)
>DroYak_CAF1 59250 110 - 1
CAGUGCAGAGCGACCUGA---UGCAGAUUGAAGCCAAAGCUUCGGCUUUGCCUAGUUAAUAACUGCCCAUAAAUAUCGCUG-GCAGUGCAAGUGUUUGCCAAUUAGCGAGCAAA
((.(((..(((((.....---.(((((((((((.((((((....)))))).))..)))))..)))).........))))).-))).))....(((((((......))))))).. ( -34.46)
>consensus
CAGUGUAGAGCGACCUGA___UGCAGAUUGCAGCCAAAGCUUCGGCUUUACCUAGUUAAUAACUGCCCAUAAAUAUCGCUG_GCAGUGCAAGUGUUUGCCAAUUAGCGAGCAAA
((.(((..(((((.........((((((((.((.((((((....)))))).))...))))..)))).........)))))..))).))....(((((((......))))))).. (-27.91 = -28.59 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:57 2006