Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,554,245 – 7,554,344 |
Length | 99 |
Max. P | 0.667668 |
Location | 7,554,245 – 7,554,344 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 91.31 |
Mean single sequence MFE | -29.54 |
Consensus MFE | -23.06 |
Energy contribution | -23.26 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.23 |
Mean z-score | -1.60 |
Structure conservation index | 0.78 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.667668 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7554245 99 - 22407834 CCUGGGAAGAGAUCAUUGAGUCCGCGGCUCUUUGGAGCCUAAGGAUUGCCAUGGAAUAUCAGACUCAGUUCGAGGAACCCAGCUAUUUUAGUAAAUAUA .(((((..((..((((.((((((..(((((....)))))...))))).).))))....))...(((.....)))...)))))................. ( -27.80) >DroSec_CAF1 53989 99 - 1 CCUGGGAAGAGAUCUUUGAGUCCGCGGCUCUUUGGAGCCUAAGGAUUGCCAUGGAAUAUCAGGCUCAGUUCAGAGAACCCAGCUAUUUUAGUAAAUAUA .(((((......(((((((((((..(((((....)))))...)))).(((.((......))))).....))))))).)))))................. ( -30.20) >DroSim_CAF1 58643 99 - 1 CCUGGGAAGAGAUCUUUGAGUCCGCGGCUCUUUGGAGCCUAAGGAUUGCCAUGGAAUAUCAGGCUCAGUUCAGAGAACCCAGAUAUUUUAGUAAAUAUA .(((((......(((((((((((..(((((....)))))...)))).(((.((......))))).....))))))).)))))((((((....)))))). ( -32.00) >DroEre_CAF1 53129 99 - 1 CCUGGGAAGAGAUCUUUGAGUCCGGGGCUCUUUGGAGCCUAAGGAUUGAAACGGAAUAUCAGGUUCAGUUCAGGGAGCCUUGCUGUUUUAGUAACUAUA ((((((.(((....)))...))).((((((....)))))).)))((((((((((......((((((........))))))..))))))))))....... ( -29.80) >DroYak_CAF1 55317 99 - 1 CCUGGGAAGAGAUCUUUGAGUCUGGGGCUCUUUGGAGCCUAAGGAUUGCCAUGGAAUAUCAGGUUCAGUUCGGGGAGCCUUGCUAUUUUAGUAAAUAUU ..(((((((....)))).(((((.((((((....))))))..))))).)))(((((((.(((((((........))))).)).)))))))......... ( -27.90) >consensus CCUGGGAAGAGAUCUUUGAGUCCGCGGCUCUUUGGAGCCUAAGGAUUGCCAUGGAAUAUCAGGCUCAGUUCAGGGAACCCAGCUAUUUUAGUAAAUAUA .(((((......(((((((((((..(((((....)))))...)))).(((.((......))))).....))))))).)))))................. (-23.06 = -23.26 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:56 2006