Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,543,638 – 7,543,737 |
Length | 99 |
Max. P | 0.685736 |
Location | 7,543,638 – 7,543,737 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 90.57 |
Mean single sequence MFE | -26.39 |
Consensus MFE | -20.98 |
Energy contribution | -21.37 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.10 |
Mean z-score | -2.51 |
Structure conservation index | 0.80 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.685736 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7543638 99 + 22407834 UUGGCAGGCAGACGGGGCUAAUUAGGGCCCACUGCACAUUCAAAUGGCGAAUCAAACAAUUUGCAUAAUUUUUGCAUAUGUCACAAAACGACAUAAAGA ...((((((((...(((((......))))).))))...........((((((......)))))).......)))).((((((.......)))))).... ( -28.60) >DroSec_CAF1 45735 99 + 1 UUGGCAAGCAGUCGGGGCUAAUUAGGGCCCACUGCACAUUCAAAUGGCGAAUCAAACAAUUUGCAUAAUUUUUGCAUAUGUCACAAAGCGACAUAAAGC ...(((((((((.(((.((.....)).))))))))...........((((((......)))))).......)))).((((((.......)))))).... ( -29.60) >DroSim_CAF1 50220 99 + 1 UUGGCAAGCAGACGGGGCUAAUUAGGGCCCACUGCACAUUCAAAUGGCGAAUCAAACAAUUUGCAUAAUUUUUGCAUAUGUCACAAAGCGACAUAAAGC ...((((((((...(((((......))))).))))...........((((((......)))))).......)))).((((((.......)))))).... ( -29.10) >DroEre_CAF1 44908 99 + 1 UUGGCAGGCAGACAGGGCUAAUUAAGGCCCAUUCCCCAUACAAAUGGCGAUUCAAACAAUUUGCAUAAUUUUUGCAUAUGUCACAAAGCGACAUAAAGA ...(((((((((..(((((......)))))..((.((((....)))).)).........))))).......)))).((((((.......)))))).... ( -23.81) >DroYak_CAF1 46062 99 + 1 UUGGCAGGCAGACGGGGCUAAUUAAGGCCCAUUCCGCAUACAAAUGGCGAAUCAAACAAUUUGCAUAAUUUUUGCAUAUGUCACAGAGCGACAUAAAGA ...((((((.((..(((((......)))))..)).)).........((((((......)))))).......)))).((((((.......)))))).... ( -26.20) >DroAna_CAF1 43800 99 + 1 UUGACAGCCAUACAGGGCUAAUUAGGGCCCAUUUCAAAUUCAAAUGGCAAAUCAAAUAAUUUGCAUAAUUUUUGCAUAUGUCACAGAGGGACACAAAAG .((((((((((...(((((......))))).((........))))))).............((((.......))))..)))))................ ( -21.00) >consensus UUGGCAGGCAGACGGGGCUAAUUAGGGCCCACUGCACAUUCAAAUGGCGAAUCAAACAAUUUGCAUAAUUUUUGCAUAUGUCACAAAGCGACAUAAAGA .(((((.(((((..(((((......)))))................((((((......))))))......)))))...)))))................ (-20.98 = -21.37 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:55 2006