| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,541,585 – 7,541,684 |
| Length | 99 |
| Max. P | 0.886061 |
| Location | 7,541,585 – 7,541,684 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 77.78 |
| Mean single sequence MFE | -27.65 |
| Consensus MFE | -19.94 |
| Energy contribution | -19.72 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.886061 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7541585 99 + 22407834 AUCAU---UCUUUUCUUUCAGUGUAGUGAAGUUCCUUGGCAUGGAAUUAAUACGAGCAAGGCACGCGCUUCUUCAUAUUGCUCGUGCCGAACCAUAGCUC-----CA---------- .....---..............(((....((((((.......))))))..)))((((..((((((.((...........)).))))))........))))-----..---------- ( -23.40) >DroSec_CAF1 43729 99 + 1 AACAU---UCUUUUCUUGCAGUGUAGCGAAGUUCCUUGGCAUGGAAUUAAUACGAGCAAGGCACGCGCUUCAUCAUAUCGCUCGUGCCGAACCAUAGCUC-----CC---------- ....(---((.....((((..((((....((((((.......))))))..)))).))))((((((.((...........)).))))))))).........-----..---------- ( -24.70) >DroSim_CAF1 47849 99 + 1 AACAU---UCUUUUCUUUCAGUGUAGCGAAGUUCCUUGGCAUGGAAUUAAUACGAGCAAGGCACGCGCUUCAUCAUAUCGCUCGUGCCGAACCAUAGCUC-----CC---------- .....---..............(((....((((((.......))))))..)))((((..((((((.((...........)).))))))........))))-----..---------- ( -22.80) >DroEre_CAF1 42875 95 + 1 AACU-------UUUCUUUCAGUGCAGCGGAGUUCCUUGGCUUGGAAUUAAUACGAGCAAGGCACGCGCUUCUUCAUAUUGCUCGUGCCGAAGUAUAGCUC-----AC---------- ....-------.........(((.(((..(.(((....(((((.........)))))..((((((.((...........)).))))))))).)...))))-----))---------- ( -28.00) >DroYak_CAF1 43998 104 + 1 AACUU---CGUUUUCUUUCAGUGCAGCGGAGUUCCUUGGCUUGGAAUUCAUGCGAGCAAGGCACGCGCUUCUUCAUUUUGCUCGUGCCGAAACAUAGCUCCUUAUAG---------- .....---.(((...((((..(((.((((((((((.......))))))).)))..))).((((((.((...........)).))))))))))...))).........---------- ( -32.80) >DroAna_CAF1 41897 112 + 1 AUUAUUAUGUUAUUUUUCCAGUGCAUAUUAGCUCCUUGGCUGGAAAUUAAUGUGGACAAGGCACGCGCUUCUUCAUUCUGCACGUGCCUGGCCACAAUUC-----CCCCCACCUGGC .................((((.((......))....(((..((((.....(((((...(((((((.((...........)).)))))))..))))).)))-----)..))).)))). ( -34.20) >consensus AACAU___UCUUUUCUUUCAGUGCAGCGAAGUUCCUUGGCAUGGAAUUAAUACGAGCAAGGCACGCGCUUCUUCAUAUUGCUCGUGCCGAACCAUAGCUC_____CC__________ ......................(((....((((((.......))))))..)))((((..((((((.((...........)).))))))........))))................. (-19.94 = -19.72 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:54 2006