Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,540,086 – 7,540,202 |
Length | 116 |
Max. P | 0.520917 |
Location | 7,540,086 – 7,540,202 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 84.46 |
Mean single sequence MFE | -31.50 |
Consensus MFE | -23.96 |
Energy contribution | -24.68 |
Covariance contribution | 0.73 |
Combinations/Pair | 1.26 |
Mean z-score | -1.70 |
Structure conservation index | 0.76 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.520917 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7540086 116 - 22407834 UUU-CUCCAAGGCGUCGGAGAAAACUUUUCCGGCAAAUUUGUGGCUAAUUUAUGAGACCAACACAGGUAGAAAGAAGAAAUGGGAAAUGAGCUGAGUCUAGAAAGGCUUGGCUGUAC (((-(.(((....((((((((.....))))))))..(((((((.((........)).....)))))))............)))))))..(((..(((((....)))))..))).... ( -33.30) >DroSec_CAF1 42252 116 - 1 UUU-UUCCAAGGCGUCGGAGAAAACUUUUCCGGCAAAUUUGUGGCUAAUUUAUGAGACCAACACAGGUAGAAAGAAGAAAAGGGAAAUGAGCUGAGUCUAGAACGGCUUGGCUGUAC .((-((((.....((((((((.....))))))))..(((((((.((........)).....))))))).............))))))..(((..((((......))))..))).... ( -32.60) >DroSim_CAF1 46349 116 - 1 UUU-UUCCAAGGCGUCGGAGAAAACUUUUCCGGCAAAUUUGUGGCUAAUUUAUGAGACCAACGCAGGUAGGAAGAAGAAAAGGGAAAUGAGCUGAGUCUAGAAAGGCUUGGCUGUAC (((-((((.....((((((((.....))))))))..(((((((.((........)).....))))))).))))))).............(((..(((((....)))))..))).... ( -34.70) >DroEre_CAF1 41380 116 - 1 UUU-UUCCAAGGCGUCGGAGAAAACUUUUCCGGCAAAUUUGUGGCUAAUUUAUGAGACCAACGCAGGUAGAAAGAAAGGAAGGGAAAUGAGCUGAGUCUAGAAAGGUUUGGCUGUAC (((-((((.....((((((((.....))))))))..(((((((.((........)).....))))))).........))))))).....(((..(..((....))..)..))).... ( -29.50) >DroYak_CAF1 42501 116 - 1 UUUUUUCUAAGGCGUCGGAGAAAAGUUUUCCGGCAAAUUUGUGGCUAAUUUAUGAGACCAACACAGGUAGCAAGGAA-UAAGGGAAAUGAGCUGAAUCCAAAAAGGUUCGGCUGUAC ....((((...((((((((((.....))))))))..(((((((.((........)).....))))))).))..))))-...........(((((((((......))))))))).... ( -31.30) >DroAna_CAF1 40574 94 - 1 UUU-UUUGGUGGCGCCGAAGGAAACUUUUCCGGCAAAUUUGUGGCUAAUUUAUGGGACCAGCUCAGGUAGAAG---------------GAGCUG-------CAGGGUCUGGCUGUAC ...-....(..(((((((((....)))...))))...((((..(((..(((.((((.....))))....))).---------------.)))..-------)))).....))..).. ( -27.60) >consensus UUU_UUCCAAGGCGUCGGAGAAAACUUUUCCGGCAAAUUUGUGGCUAAUUUAUGAGACCAACACAGGUAGAAAGAAGAAAAGGGAAAUGAGCUGAGUCUAGAAAGGCUUGGCUGUAC ....((((.....(((((((((...)))))))))..(((((((.((........)).....)))))))..............))))...(((((((((......))))))))).... (-23.96 = -24.68 + 0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:52 2006