Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,537,869 – 7,537,961 |
Length | 92 |
Max. P | 0.982888 |
Location | 7,537,869 – 7,537,961 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 89.11 |
Mean single sequence MFE | -10.96 |
Consensus MFE | -9.24 |
Energy contribution | -9.68 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.05 |
Mean z-score | -2.12 |
Structure conservation index | 0.84 |
SVM decision value | 1.93 |
SVM RNA-class probability | 0.982888 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7537869 92 + 22407834 CCAUUUUCCAAGGUAAUAAAAUCCUAUCCAUCAAUGGUUUUUAUUGCUUUUCAUCCAUUU-CUAUAUCAUAAAUCAAAUGAUUUGUUUUCCUC .........((((((((((((.((...........)).))))))))))))..........-.......(((((((....)))))))....... ( -14.50) >DroSec_CAF1 40041 93 + 1 CCAUUUUCCAAGGUAAUAAAAUCCUAUCCAUCAAUGGUUUUUACUGCUUUUCAUCCAUUCGCUGUAUAAUAAAUCAAAUGAUUUGUUUUCCUC .........((((((.(((((.((...........)).))))).)))))).................((((((((....))))))))...... ( -11.60) >DroSim_CAF1 44148 92 + 1 CCAUUUUCCAAGGUAAUAAAAUCCUAUCCAUCAAUGGUUUUUACUGCUUUUCAUCCGUUU-CUGUGUCAUAAAUCAAAUGAUUUGUUUUCCUC .........((((((.(((((.((...........)).))))).))))))..........-.......(((((((....)))))))....... ( -10.80) >DroEre_CAF1 39160 86 + 1 CCAUUUUCCACGGCAAUAAAAUCCAAUUCAUCAAUGGUUUUUACUGCUCUUCAUCCAUUG-------CAUAAAUCAAAUUAUUUGUUAUCCUC ...........((((.(((((.(((.........))).))))).))))............-------.......................... ( -8.10) >DroYak_CAF1 40286 86 + 1 CCAUUUUCCAUGGUAAUAAAAUCCAAUCCAUCAAUGGUUUUUACUGCUUUUCGUCCAUUU-------CAUAAAUCAAAUGAUUUGUUUUCCUC ...........((((.(((((.(((.........))).))))).))))............-------.(((((((....)))))))....... ( -9.80) >consensus CCAUUUUCCAAGGUAAUAAAAUCCUAUCCAUCAAUGGUUUUUACUGCUUUUCAUCCAUUU_CU_U_UCAUAAAUCAAAUGAUUUGUUUUCCUC .........((((((.(((((.((...........)).))))).))))))..................(((((((....)))))))....... ( -9.24 = -9.68 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:51 2006