Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,533,069 – 7,533,163 |
Length | 94 |
Max. P | 0.845743 |
Location | 7,533,069 – 7,533,163 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 97.02 |
Mean single sequence MFE | -32.22 |
Consensus MFE | -30.32 |
Energy contribution | -30.80 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.07 |
Mean z-score | -1.33 |
Structure conservation index | 0.94 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.845743 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7533069 94 + 22407834 GGCCAGGUUUUCAGGCACCUUCAGCCGGCGAAAGAGACAGCAACUGAGUUUUAGAAAGAGGCGGUUGCACGGACGGAGAUGGAGAGUUUGUCGU (((.((.((((((.....((((..(((.(....).....(((((((..(((.....)))..))))))).)))..)))).)))))).)).))).. ( -27.60) >DroSec_CAF1 35279 94 + 1 GGCCAGGUUUUCAGGCACCUCCAGCCGGCGAAAGAGACAGCAACUGAGUUUUAGAAAGAGGCGGUUGCACGGACGGAGAUGGAGACUUUGUCGU (((.(((((((((.....((((..(((.(....).....(((((((..(((.....)))..))))))).)))..)))).))))))))).))).. ( -34.40) >DroSim_CAF1 39617 94 + 1 GGCCAGGUUUUCAGGCACCUCCAGCCGGCGAAAGAGACAGCAACUGAGUUUUAGAAAGAGGCGGUUGCACGGACGGAGAUGGAGACUUUGUCGU (((.(((((((((.....((((..(((.(....).....(((((((..(((.....)))..))))))).)))..)))).))))))))).))).. ( -34.40) >DroEre_CAF1 34227 94 + 1 GGCCAGGUUUUCAGGCACCUCCAGCCGGCGAAAGAGACAGCAACUGCGUUUUAGAAAGAGGCGGCUGCACGGACGGAGAUGGAGACUUUGUCGU (((.(((((((((.....((((..(((.(....).....(((.((((.(((.....))).)))).))).)))..)))).))))))))).))).. ( -34.60) >DroYak_CAF1 35293 94 + 1 GGCCAGGUUUUCAGGCACCUCCAGCCGGCGAAAGAGACAGCGACGGAGUAUUAGAAAGAGGCGGUUGCACGGACGGAGAUGGAGACUUUGUCGU (((.(((((((((.....((((..(((.(....).....(((((.(....((.....))..).))))).)))..)))).))))))))).))).. ( -30.10) >consensus GGCCAGGUUUUCAGGCACCUCCAGCCGGCGAAAGAGACAGCAACUGAGUUUUAGAAAGAGGCGGUUGCACGGACGGAGAUGGAGACUUUGUCGU (((.(((((((((.....((((..(((.(....).....(((((((..(((.....)))..))))))).)))..)))).))))))))).))).. (-30.32 = -30.80 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:50 2006