Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,519,497 – 7,519,587 |
Length | 90 |
Max. P | 0.811281 |
Location | 7,519,497 – 7,519,587 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 75.04 |
Mean single sequence MFE | -18.97 |
Consensus MFE | -14.97 |
Energy contribution | -14.92 |
Covariance contribution | -0.05 |
Combinations/Pair | 1.22 |
Mean z-score | -0.93 |
Structure conservation index | 0.79 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.811281 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7519497 90 - 22407834 U----AUACAUAUAUAUGUACAUAU-UUUUUAAGAAUGUGAGGCUGGUCACGUCGAAA---UGGCGUUGCAAACAGUUUUGCAAAUUAAUGAGGCAGU .----.(((((....)))))(((((-((.....)))))))..((((.(((((((....---.)))))((((((....)))))).........)))))) ( -18.90) >DroSec_CAF1 21754 75 - 1 U----AUAUA----------------UUUUUAAGAAUGUGAGGCUGGUCACGUCGAAA---UGGCGUUGCAAACAGUUUUGCAAAUUAAUGAGGCAGU .----.....----------------...((((...((..((((((((.(((((....---.))))).))...))))))..))..))))......... ( -16.30) >DroSim_CAF1 25634 75 - 1 U----AUAUA----------------UUUUUAAGAAUGUGAGGCUGGUCACGUCGAAA---UGGCGUUGCAAACAGUUUUGCAAAUUAAUGAGGCAGU .----.....----------------...((((...((..((((((((.(((((....---.))))).))...))))))..))..))))......... ( -16.30) >DroEre_CAF1 20475 93 - 1 UUUGUACACCUAUAUGUAUGUA--UAUUUUUAAGAAUCUGAGGCUGGUCACGUCGAAA---UGGCGUAGCAAACAGUUUCGCAAAUAAAUGAGGCAGU (((((.....(((((....)))--)).............((((((((..(((((....---.)))))..)...))))))))))))............. ( -16.60) >DroYak_CAF1 21447 95 - 1 UUUGUAUACAUACAUGUGUGUAUAUAUUUUUAAGAAUGUGAGGCUGGUCACGUCGAAA---UGGCGUUGCAAACAGUUUUGCAAAUUAAUGAGGCAGC ..((((((((((....))))))))))...((((...((..((((((((.(((((....---.))))).))...))))))..))..))))......... ( -25.30) >DroAna_CAF1 21518 94 - 1 CUUAUAAACAUCCAUA----UAUUUCCUUCCCAAACUGCGAGGCUGGUCACGUCGAGUGUUUUAUUUGGCGAACAGUUUUGCAAAUUAAUGAGCCGGC ................----................((((((((((....(((((((((...)))))))))..))))))))))............... ( -20.40) >consensus U____AUACAUA_AU_____UA__U_UUUUUAAGAAUGUGAGGCUGGUCACGUCGAAA___UGGCGUUGCAAACAGUUUUGCAAAUUAAUGAGGCAGU ....................................((((((((((((.((((((......)))))).))...))))))))))............... (-14.97 = -14.92 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:49 2006